PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008244189.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family B3
Protein Properties Length: 434aa    MW: 49638.9 Da    PI: 7.4623
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008244189.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B398.34.6e-31115219199
                     EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS. CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr. 87 
                     f+kv tpsdv+k++rlv+pk++ae++         + ++  l ++d++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++  g+ 
  XP_008244189.1 115 FDKVVTPSDVGKLNRLVIPKQHAERYfpldstA--NDKGLLLNFQDRTGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFERGvGDs 207
                     89*************************999643..346779************************************************665888 PP

                     SEE..EEEEE-S CS
              B3  88 sefelvvkvfrk 99 
                      + +l++ ++r+
  XP_008244189.1 208 GKDRLYIDWRRR 219
                     999999999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.2E-41109222IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.41E-30111221IPR015300DNA-binding pseudobarrel domain
CDDcd100171.11E-25113209No hitNo description
PROSITE profilePS5086314.762115220IPR003340B3 DNA binding domain
PfamPF023621.4E-28115219IPR003340B3 DNA binding domain
SMARTSM010191.6E-23115220IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
MEFVQRDQKG YSDKEDQDQE DQEEEDIISS KFSSSSHNYN NSNYGSSPKY KATFVPPPLP  60
HHHQYQQQKP WAVHNHGSPE AINFMDLSLN HEQAAADGAN NNNNWPPNSE REHMFDKVVT  120
PSDVGKLNRL VIPKQHAERY FPLDSTANDK GLLLNFQDRT GKPWRFRYSY WNSSQSYVMT  180
KGWSRFVKEK KLDAGDIVSF ERGVGDSGKD RLYIDWRRRP PPPPPPPHHH HHGQFGNCND  240
RCGCGGGGGR LYSPLQRPPP SMMSMPLRHH DYFHPSNNNV HHPYHHHHHQ IMNHQYLQHQ  300
IHHQLQVERD QVVHHHHQYP MVVDSVPFVQ HGKMSSSGAS AGASTGKRLR LFGVNMECSP  360
NIEEDQTDEH QYQILPSTAI PYNHLPSSSL SAPLELRLPN TIVANQIPLP NTGAADQYLS  420
KKGKSTSLSF YLDP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A4e-671092202114B3 domain-containing transcription factor NGA1
5os9_B4e-671092202114B3 domain-containing transcription factor NGA1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRegulates lateral organ growth. Functionally redundant with NGA2, NGA3 and NGA4. {ECO:0000269|PubMed:16603651}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008244189.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008244188.10.0PREDICTED: B3 domain-containing transcription factor NGA1-like
RefseqXP_008244189.10.0PREDICTED: B3 domain-containing transcription factor NGA1-like
RefseqXP_016652261.10.0PREDICTED: B3 domain-containing transcription factor NGA1-like
SwissprotO827993e-74NGA1_ARATH; B3 domain-containing transcription factor NGA1
TrEMBLM5XFQ40.0M5XFQ4_PRUPE; Uncharacterized protein
STRINGXP_008244188.10.0(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.12e-65B3 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Lee BH, et al.
    The Arabidopsis thaliana NGATHA transcription factors negatively regulate cell proliferation of lateral organs.
    Plant Mol. Biol., 2015. 89(4-5): p. 529-38
    [PMID:26433582]
  3. Lozano-Sotomayor P, et al.
    Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana.
    Plant J., 2016. 88(3): p. 437-451
    [PMID:27402171]
  4. Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
    Active suppression of a leaf meristem orchestrates determinate leaf growth.
    Elife, 2017.
    [PMID:27710768]
  5. Sasnauskas G,Manakova E,Lapėnas K,Kauneckaitė K,Siksnys V
    DNA recognition by Arabidopsis transcription factors ABI3 and NGA1.
    FEBS J., 2018. 285(21): p. 4041-4059
    [PMID:30183137]
  6. Sato H, et al.
    Arabidopsis thaliana NGATHA1 transcription factor induces ABA biosynthesis by activating NCED3 gene during dehydration stress.
    Proc. Natl. Acad. Sci. U.S.A., 2018. 115(47): p. E11178-E11187
    [PMID:30397148]