PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_008244183.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | NAC | ||||||||
Protein Properties | Length: 448aa MW: 51508.9 Da PI: 4.6005 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 144.5 | 5.7e-45 | 15 | 149 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk......kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 +p+GfrFhPt+eelv++yL+kk ++k+++++++i+e+ +k+eP dLp ++ ew+fFs +d ky++++r+nrat +gyWk tgk+ XP_008244183.2 15 VPVGFRFHPTEEELVNHYLRKKKQDKDFKVNHIIPEIAFCKHEPCDLPGllftepDSPYHDMEWFFFSLKDYKYSNSNRSNRATPKGYWKITGKE 109 599***************************999***************54565543333788********************************* PP NAM 90 kevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 + + ++ ++ ++g k+tL+fy+gr pk++kt+Wvmhey l XP_008244183.2 110 RVIRARgSKFVIGRKRTLTFYEGRVPKSKKTNWVMHEYYL 149 ****98445569**************************76 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.32E-51 | 10 | 173 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 49.628 | 15 | 173 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.5E-25 | 16 | 148 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 448 aa Download sequence Send to blast |
MGSKCNRKTT GGVSVPVGFR FHPTEEELVN HYLRKKKQDK DFKVNHIIPE IAFCKHEPCD 60 LPGLLFTEPD SPYHDMEWFF FSLKDYKYSN SNRSNRATPK GYWKITGKER VIRARGSKFV 120 IGRKRTLTFY EGRVPKSKKT NWVMHEYYLI EDEANSNPKL AKRDFVLCRL KKKLDKKDTS 180 ICAEGEPSNC NLSNCEDQVA AVVTPEDHSP STLQSPASIE LGDVLQANDI NEDCNEMQSP 240 FGDNEYHVTD NNDISTCDEG EPHGFTMSDF KNEVADDMSR ELYAQQERNL DPTYTELEGF 300 MYIDASGFEN QAGEQCAQPD KNLDPCFHPP QPHDYCSSTL QSPIYTELGS VPHANVYNDQ 360 WQSTYDGNGQ VRNTIANFEN QTTYERISEE YPQQEENLEL IFHAPQLQDY TLQLQDYTLQ 420 PLMNTEVGDV LHDNNYIECN ELQSPVWS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 6e-36 | 13 | 173 | 15 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 6e-36 | 13 | 173 | 15 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 6e-36 | 13 | 173 | 15 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 6e-36 | 13 | 173 | 15 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 6e-36 | 13 | 173 | 18 | 168 | NAC domain-containing protein 19 |
3swm_B | 6e-36 | 13 | 173 | 18 | 168 | NAC domain-containing protein 19 |
3swm_C | 6e-36 | 13 | 173 | 18 | 168 | NAC domain-containing protein 19 |
3swm_D | 6e-36 | 13 | 173 | 18 | 168 | NAC domain-containing protein 19 |
3swp_A | 6e-36 | 13 | 173 | 18 | 168 | NAC domain-containing protein 19 |
3swp_B | 6e-36 | 13 | 173 | 18 | 168 | NAC domain-containing protein 19 |
3swp_C | 6e-36 | 13 | 173 | 18 | 168 | NAC domain-containing protein 19 |
3swp_D | 6e-36 | 13 | 173 | 18 | 168 | NAC domain-containing protein 19 |
4dul_A | 6e-36 | 13 | 173 | 15 | 165 | NAC domain-containing protein 19 |
4dul_B | 6e-36 | 13 | 173 | 15 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_008244183.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008244183.2 | 0.0 | PREDICTED: NAC domain-containing protein 86-like isoform X2 | ||||
TrEMBL | A0A314YKH8 | 0.0 | A0A314YKH8_PRUYE; NAC domain-containing protein 105-like isoform X1 | ||||
STRING | XP_008244182.1 | 0.0 | (Prunus mume) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G33060.1 | 5e-46 | NAC 014 |