PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008244182.2
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family NAC
Protein Properties Length: 450aa    MW: 51724.1 Da    PI: 4.6005
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008244182.2genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM144.55.7e-45151491128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk......kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                     +p+GfrFhPt+eelv++yL+kk ++k+++++++i+e+  +k+eP dLp           ++ ew+fFs +d ky++++r+nrat +gyWk tgk+
  XP_008244182.2  15 VPVGFRFHPTEEELVNHYLRKKKQDKDFKVNHIIPEIAFCKHEPCDLPGllftepDSPYHDMEWFFFSLKDYKYSNSNRSNRATPKGYWKITGKE 109
                     599***************************999***************54565543333788********************************* PP

             NAM  90 kevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                     + + ++ ++ ++g k+tL+fy+gr pk++kt+Wvmhey l
  XP_008244182.2 110 RVIRARgSKFVIGRKRTLTFYEGRVPKSKKTNWVMHEYYL 149
                     ****98445569**************************76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.45E-5110173IPR003441NAC domain
PROSITE profilePS5100549.62815173IPR003441NAC domain
PfamPF023652.5E-2516148IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 450 aa     Download sequence    Send to blast
MGSKCNRKTT GGVSVPVGFR FHPTEEELVN HYLRKKKQDK DFKVNHIIPE IAFCKHEPCD  60
LPGLLFTEPD SPYHDMEWFF FSLKDYKYSN SNRSNRATPK GYWKITGKER VIRARGSKFV  120
IGRKRTLTFY EGRVPKSKKT NWVMHEYYLI EDEANSNPKL AKRDFVLCRL KKKLDKKDTS  180
ICAEGEPSNC NLSNCEDQVA AVVTPESQDH SPSTLQSPAS IELGDVLQAN DINEDCNEMQ  240
SPFGDNEYHV TDNNDISTCD EGEPHGFTMS DFKNEVADDM SRELYAQQER NLDPTYTELE  300
GFMYIDASGF ENQAGEQCAQ PDKNLDPCFH PPQPHDYCSS TLQSPIYTEL GSVPHANVYN  360
DQWQSTYDGN GQVRNTIANF ENQTTYERIS EEYPQQEENL ELIFHAPQLQ DYTLQLQDYT  420
LQPLMNTEVG DVLHDNNYIE CNELQSPVWS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-361317315165NO APICAL MERISTEM PROTEIN
1ut4_B5e-361317315165NO APICAL MERISTEM PROTEIN
1ut7_A5e-361317315165NO APICAL MERISTEM PROTEIN
1ut7_B5e-361317315165NO APICAL MERISTEM PROTEIN
3swm_A5e-361317318168NAC domain-containing protein 19
3swm_B5e-361317318168NAC domain-containing protein 19
3swm_C5e-361317318168NAC domain-containing protein 19
3swm_D5e-361317318168NAC domain-containing protein 19
3swp_A5e-361317318168NAC domain-containing protein 19
3swp_B5e-361317318168NAC domain-containing protein 19
3swp_C5e-361317318168NAC domain-containing protein 19
3swp_D5e-361317318168NAC domain-containing protein 19
4dul_A5e-361317315165NAC domain-containing protein 19
4dul_B5e-361317315165NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008244182.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008244182.20.0PREDICTED: NAC domain-containing protein 105-like isoform X1
TrEMBLA0A314YKH80.0A0A314YKH8_PRUYE; NAC domain-containing protein 105-like isoform X1
STRINGXP_008244182.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14450518
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33060.15e-46NAC 014