PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_008244181.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | NAC | ||||||||
Protein Properties | Length: 418aa MW: 48454.3 Da PI: 4.5365 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 139 | 2.9e-43 | 16 | 146 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeek...ewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 p GfrFhPt+eelv++yLk+k +++++++ ++i+e+di+k++Pw++p ++++++ ew+fFs+rd ky +++r+nrat +g Wk tgk++ + XP_008244181.2 16 PLGFRFHPTEEELVDYYLKNKRQDRDFNV-NHIPEIDICKYDPWEIPgLLFAEQDSpymEWFFFSRRDYKYMNSNRSNRATPHGSWKITGKERMI 109 89***************************.88***************544444444577************************************ PP NAM 93 lsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ +++++g+k+t++fy+ k++kt+Wvmhey+l XP_008244181.2 110 RARgSNAVIGTKRTMTFYERGVLKSKKTNWVMHEYNL 146 **9666779*********9999999**********87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.32E-48 | 13 | 169 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 46.135 | 15 | 170 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.4E-25 | 16 | 146 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 418 aa Download sequence Send to blast |
MGSKCYRKTT EGDPVPLGFR FHPTEEELVD YYLKNKRQDR DFNVNHIPEI DICKYDPWEI 60 PGLLFAEQDS PYMEWFFFSR RDYKYMNSNR SNRATPHGSW KITGKERMIR ARGSNAVIGT 120 KRTMTFYERG VLKSKKTNWV MHEYNLFESE ASPDPQLAER DFVLYRMKKN PDKKDTSVFA 180 EGEPSSYNWS NCEDQAAHVT PESQDHSPST LQSPAYIELG DVLQVNGFNG DCNDMQSPFG 240 DNDYSVTHKN DFSTFDEVAY DMSQELYAQQ DKNSYMLMPQ SPTFRNLEDF TYINASDFGN 300 QTANNMVLEQ AQDYHSFTLP SPIYSELGSV PHDDVYNNEW QSAYANFENQ TTDERISEEC 360 PQPKENLRSI LSASQLADYT SQSLMNTEEY QRRHCEIGIE GAAGMNWEGS FFNFPLKP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 6e-32 | 15 | 170 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 6e-32 | 15 | 170 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 6e-32 | 15 | 170 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 6e-32 | 15 | 170 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
4dul_A | 6e-32 | 15 | 170 | 17 | 165 | NAC domain-containing protein 19 |
4dul_B | 6e-32 | 15 | 170 | 17 | 165 | NAC domain-containing protein 19 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_008244181.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008244181.2 | 0.0 | PREDICTED: NAC transcription factor 29-like isoform X1 | ||||
TrEMBL | A0A251QJV8 | 0.0 | A0A251QJV8_PRUPE; Uncharacterized protein | ||||
STRING | XP_008244181.1 | 0.0 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14450 | 5 | 18 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35580.1 | 5e-41 | NAC transcription factor-like 9 |