PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008244176.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family NAC
Protein Properties Length: 462aa    MW: 53686.3 Da    PI: 7.9026
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008244176.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM141.35.6e-44141401127
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                     +p+GfrFhPtdeelv++yLkkk++g + +++++i+e+di+k+ePwdLpk   +k+++++w+fFs+ +    ++++knr+t++g+Wk tg++++++
  XP_008244176.1  14 VPVGFRFHPTDEELVTHYLKKKLKGMDSHVSNIIREIDILKFEPWDLPKssLLKSDDENWFFFSRPEY---NKHKKNRTTQEGFWKITGREHAIK 105
                     599***************************99***************954567788999****99876...4579******************** PP

             NAM  94 sk.kgelvglkktLvfykgrapkgektdWvmheyr 127
                     ++ +++++g k++L+fy+gr +++e+t+Wvmhey 
  XP_008244176.1 106 ARdNRSVIGRKRILTFYRGRVRNSERTNWVMHEYY 140
                     9967778***************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.09E-477159IPR003441NAC domain
PROSITE profilePS5100550.13214160IPR003441NAC domain
PfamPF023653.7E-2515140IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 462 aa     Download sequence    Send to blast
MIVISRAAED DLSVPVGFRF HPTDEELVTH YLKKKLKGMD SHVSNIIREI DILKFEPWDL  60
PKSSLLKSDD ENWFFFSRPE YNKHKKNRTT QEGFWKITGR EHAIKARDNR SVIGRKRILT  120
FYRGRVRNSE RTNWVMHEYY IPDDNPNAQR DFVLCRLKKN VKRSDENTDV AATCDEGETH  180
NASDVENQPV NDMNMEDTWP PENLDYFERA RDLLLASSPS NNDHNAFQPA FSAHDQEANF  240
EDFLRTLIVE PQFGVISDRD REPVHHRVQS LQMRCEPQIP YELLQCGSSQ SRRDTDVILH  300
NQLSRQASSS VNVASKPGTY QREHRPQQQS GPIIVFRDTS ADEYYTREKT RRITYPPEKP  360
KEPEKPKPAA EKPKVPPYPR TAADFPQKQI SITKSSIDKK VPQGSMEQTQ NRTTPRNWKG  420
SFITWQTSPL TSPPSVYIFN TVLGAILFLF CVREVVLYGE WC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-301215915164NO APICAL MERISTEM PROTEIN
1ut4_B3e-301215915164NO APICAL MERISTEM PROTEIN
1ut7_A3e-301215915164NO APICAL MERISTEM PROTEIN
1ut7_B3e-301215915164NO APICAL MERISTEM PROTEIN
3swm_A3e-301215918167NAC domain-containing protein 19
3swm_B3e-301215918167NAC domain-containing protein 19
3swm_C3e-301215918167NAC domain-containing protein 19
3swm_D3e-301215918167NAC domain-containing protein 19
3swp_A3e-301215918167NAC domain-containing protein 19
3swp_B3e-301215918167NAC domain-containing protein 19
3swp_C3e-301215918167NAC domain-containing protein 19
3swp_D3e-301215918167NAC domain-containing protein 19
4dul_A3e-301215915164NAC domain-containing protein 19
4dul_B3e-301215915164NAC domain-containing protein 19
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008244176.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008244176.10.0PREDICTED: NAC domain-containing protein 62-like
TrEMBLA0A251QM120.0A0A251QM12_PRUPE; Uncharacterized protein
STRINGXP_008244176.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13478522
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.17e-44NAC transcription factor-like 9