PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_008244092.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
|
||||||||
Family | G2-like | ||||||||
Protein Properties | Length: 256aa MW: 28978 Da PI: 9.4904 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 103.2 | 1.6e-32 | 13 | 66 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +rlrWt+eLH+rFveav++LGG+++AtPk il++m+v gLt++h+kSHLQkYR+ XP_008244092.2 13 ERLRWTQELHDRFVEAVTKLGGPDRATPKGILKAMSVSGLTIYHIKSHLQKYRI 66 7****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.728 | 9 | 69 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.8E-30 | 11 | 67 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.69E-17 | 12 | 66 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 5.9E-26 | 13 | 67 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 3.5E-9 | 14 | 65 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 2.4E-10 | 98 | 136 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 256 aa Download sequence Send to blast |
MGPSRSDGSA GRERLRWTQE LHDRFVEAVT KLGGPDRATP KGILKAMSVS GLTIYHIKSH 60 LQKYRISKFI PESTSKGKLQ KKNISEMLPN FGATSGAQLN EALKVMQIQV QRRLSDQNEV 120 QKILKHKIEA QARFLDIFSA ERHNNKKNRP ILITKPSKVP LPRTSLPSLC EDSESNAKEF 180 CADSEADKAE IQSSAEQFQA LKRLRLHHQN EEVCEPALNS EWYNQSHSFL LPHEDHINFP 240 WNLAACSSPL VPTCFL |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 3e-23 | 11 | 69 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 3e-23 | 11 | 69 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 3e-23 | 11 | 69 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 3e-23 | 11 | 69 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 3e-23 | 11 | 69 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 3e-23 | 11 | 69 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 3e-23 | 11 | 69 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 3e-23 | 11 | 69 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_008244092.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_008244092.2 | 0.0 | PREDICTED: protein PHR1-LIKE 1-like | ||||
Swissprot | Q9SJW0 | 4e-47 | PHL7_ARATH; Myb family transcription factor PHL7 | ||||
TrEMBL | A0A251NWT9 | 1e-179 | A0A251NWT9_PRUPE; Uncharacterized protein | ||||
TrEMBL | M5W7R7 | 1e-179 | M5W7R7_PRUPE; Uncharacterized protein | ||||
STRING | XP_008244092.1 | 0.0 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10659 | 25 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G01060.1 | 2e-49 | G2-like family protein |