PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008244068.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family ERF
Protein Properties Length: 195aa    MW: 21980.7 Da    PI: 9.3187
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008244068.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.72.2e-161362255
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    ++ GVr+++ +grWvAeI+d s   ++ r +lg+f+ aeeAa a+++a++ l+g
  XP_008244068.1 13 RFLGVRQRP-SGRWVAEIKDSS---QKLRLWLGTFDRAEEAALAYDKAARLLRG 62
                    578******.7*********42...36***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.31E-301270No hitNo description
Gene3DG3DSA:3.30.730.104.1E-281370IPR001471AP2/ERF domain
PROSITE profilePS5103219.9021370IPR001471AP2/ERF domain
SMARTSM003805.6E-331376IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-191471IPR016177DNA-binding domain
PRINTSPR003675.2E-71425IPR001471AP2/ERF domain
PfamPF008472.5E-101662IPR001471AP2/ERF domain
PRINTSPR003675.2E-73652IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MRKVNSNNIS GKRFLGVRQR PSGRWVAEIK DSSQKLRLWL GTFDRAEEAA LAYDKAARLL  60
RGRNAKTNFP CHIMNTHEEN CSILRKNPRL YQLLQHAIMK NHAIARSSST KINPWDRNQI  120
RGVDFDTLVE ETIVCSSSGN TSGQDHDDHE DRNKLCALSF GGCKVYSSVV VAPSFSASSQ  180
TQCQQAHEEK GYQEA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-161173366ATERF1
3gcc_A3e-161173366ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008244068.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008244068.11e-147PREDICTED: ethylene-responsive transcription factor RAP2-11-like
TrEMBLM5WZK11e-142M5WZK1_PRUPE; Uncharacterized protein
STRINGXP_008244068.11e-146(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF123492734
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.18e-17related to AP2 11