PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_008244036.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | TCP | ||||||||
Protein Properties | Length: 465aa MW: 53224 Da PI: 6.84 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 121.7 | 8.6e-38 | 170 | 332 | 3 | 133 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.........ssssa..sec...eaesssssas 83 k+drhski T++g+RdRR+Rls+e+a++fF Lqd L fdk+skt+eWLl qa p+ik+l+g+ s+s+a ++c + +a+ XP_008244036.1 170 CKRDRHSKINTARGLRDRRMRLSLEVARKFFWLQDALHFDKASKTVEWLLIQATPEIKKLVGDckhmmsstkSTSPAtsESCeviS---GIDEAA 261 69*************************************************************99888776633333323333231...222222 PP TCP 84 nsssg.........................kaaksaakskksqksaasalnlakesrakarararertrekmrik 133 + +ak+ + +++ +++++++ l+k sr+kararare+ rek+r+ XP_008244036.1 262 ----TntnihinidggndgddkliqsceiqPSAKERKVARRQLSRKTAFHPLSKASREKARARAREKAREKQRTH 332 ....023344667788999999999*99974444444444555555557**********************9976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 29.99 | 171 | 229 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 3.3E-40 | 171 | 331 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51370 | 10.291 | 311 | 328 | IPR017888 | CYC/TB1, R domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 465 aa Download sequence Send to blast |
MFPSNSNNNL NNTGNELPVS YPHVDQSFFH SRPFLHEITT LNPNSLHPNL NSKQEEEQRQ 60 QEGPHHHPLS FFYFPSPLED DDVLLFQQHH HYDHQHDHVH DMPLHDSQQA PPLTTMREAV 120 AANNTLADDH RQTTTTSTTL NIKMVDWDSN KNHGEMMNMD QPQIPRRRSC KRDRHSKINT 180 ARGLRDRRMR LSLEVARKFF WLQDALHFDK ASKTVEWLLI QATPEIKKLV GDCKHMMSST 240 KSTSPATSES CEVISGIDEA ATNTNIHINI DGGNDGDDKL IQSCEIQPSA KERKVARRQL 300 SRKTAFHPLS KASREKARAR AREKAREKQR THQRVVDVDD QSKKQRGDQE NLSRLGSWSP 360 FETGEESAGT QSHNNNNISI NSLEGLVHHE IEEPMSSCQV GDHPDLVVDH GTTHDPLVIM 420 GKWSPPSIFS SLQQNIGISQ EHHQFADIQF FGKPWEVYNN PHNLF |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_008244036.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008244033.1 | 0.0 | PREDICTED: transcription factor TCP18 | ||||
Refseq | XP_008244034.1 | 0.0 | PREDICTED: transcription factor TCP18 | ||||
Refseq | XP_008244035.1 | 0.0 | PREDICTED: transcription factor TCP18 | ||||
Refseq | XP_008244036.1 | 0.0 | PREDICTED: transcription factor TCP18 | ||||
TrEMBL | A0A251PBZ8 | 0.0 | A0A251PBZ8_PRUPE; Uncharacterized protein | ||||
STRING | XP_008244033.1 | 0.0 | (Prunus mume) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18550.2 | 1e-22 | TCP family protein |