PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_008243974.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | TCP | ||||||||
Protein Properties | Length: 229aa MW: 24941.8 Da PI: 6.431 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 110.8 | 2e-34 | 57 | 177 | 3 | 104 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg......... 88 k ++ ++hTkv+gR+RRvR++a caar+F+L++eLG+ +d++tieWLl+ a+ +i ++tgt++ +a+ ++++ +s++ +s + XP_008243974.1 57 RKSASSRDRHTKVNGRGRRVRMPAMCAARIFQLTRELGHRSDGETIEWLLRHAESSIVAATGTGTLPAEPISTSAPAVSSQVPSLAcrahplssl 151 5778999********************************************************88888555333333333333333444455556 PP TCP 89 ..........kaaksaakskksqksa 104 +++ +a+++++++++ XP_008243974.1 152 ngggqfmyplVSSAHQAQPNQPHQQP 177 66666777652222222444444444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 2.4E-29 | 61 | 166 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 26.157 | 62 | 116 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007623 | Biological Process | circadian rhythm |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
MGSEMALAPL RNHEDPTLIP TAVLSSAALE TASSRQHSQQ SIQSLQPKTH NQLSQTRKSA 60 SSRDRHTKVN GRGRRVRMPA MCAARIFQLT RELGHRSDGE TIEWLLRHAE SSIVAATGTG 120 TLPAEPISTS APAVSSQVPS LACRAHPLSS LNGGGQFMYP LVSSAHQAQP NQPHQQPSIR 180 LDLCQPAGLD YTEYRQHMPF TSLLLHPAEN EEEEEEDGQQ EEALCLGDG |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_008243974.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008243974.1 | 1e-168 | PREDICTED: transcription factor TCP11 | ||||
Swissprot | Q9SJK7 | 3e-35 | TCP11_ARATH; Transcription factor TCP11 | ||||
TrEMBL | A0A314ZUJ1 | 1e-153 | A0A314ZUJ1_PRUYE; Transcription factor TCP11 | ||||
STRING | XP_008243974.1 | 1e-167 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3819 | 33 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69690.1 | 3e-34 | TCP family protein |