PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008243961.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB_related
Protein Properties Length: 433aa    MW: 49013.6 Da    PI: 9.816
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008243961.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding223.8e-07314361448
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                      WT  E   lvd++ ++G g+W+ I r +      Rt+ +++++w+++l
   XP_008243961.1 314 WTLSEVTTLVDGISEYGVGRWTDIKRVLFsssAYRTPIDLRDKWRNLL 361
                      ****************************9***99************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.5E-10306365IPR009057Homeodomain-like
PROSITE profilePS5129412.603306365IPR017930Myb domain
SuperFamilySSF466894.26E-15308385IPR009057Homeodomain-like
SMARTSM007171.1E-7310363IPR001005SANT/Myb domain
CDDcd116601.16E-16312362No hitNo description
PfamPF139214.5E-5314367No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MVSYAVARRM QESAWTLKIF PVDMTLGLIH TVVLDGLLDE VDEVEDIHAI NGLASPCDDY  60
LLDIGFTGKA SELGFGPCEK SHLGNSSSES QSPRLSGSSN GAVGISESST VTIQEFECKN  120
NSIDKAVTHE FHGGFRRKKR RRTPVEGNVY PASINLQNLE LDNDEKTLVK EIVSGENEKL  180
SVEATKLGAF CKEKRLRKPT LRYIEEFSGK KSKDSNEREN CSALTATQDR SKVRCQNEHH  240
HMSPGILSSV PEEDSISENQ TLAEFRTQRK LAKKHASILA LESDEQPITS ESEDDHVPKK  300
RSRKHDRRKH QRMWTLSEVT TLVDGISEYG VGRWTDIKRV LFSSSAYRTP IDLRDKWRNL  360
LRASCGKKMK KEVEQKEMRA LPKSLVRRVR ELATVHPYPR QRGKKFAPPI LPTPSKSASS  420
DLIRKYVRRK NRS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1135141RRKKRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008243961.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008243961.10.0PREDICTED: uncharacterized protein LOC103342147 isoform X3
TrEMBLA0A251NUQ90.0A0A251NUQ9_PRUPE; Uncharacterized protein
STRINGXP_008243959.10.0(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.11e-19TRF-like 6