PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008243960.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB_related
Protein Properties Length: 500aa    MW: 56425.4 Da    PI: 8.3449
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008243960.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.74.6e-07381428448
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                      WT  E   lvd++ ++G g+W+ I r +      Rt+ +++++w+++l
   XP_008243960.1 381 WTLSEVTTLVDGISEYGVGRWTDIKRVLFsssAYRTPIDLRDKWRNLL 428
                      ****************************9***99************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.7E-10373432IPR009057Homeodomain-like
PROSITE profilePS5129412.603373432IPR017930Myb domain
SuperFamilySSF466895.31E-15375452IPR009057Homeodomain-like
SMARTSM007171.1E-7377430IPR001005SANT/Myb domain
CDDcd116601.02E-16379429No hitNo description
PfamPF139215.5E-5381434No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 500 aa     Download sequence    Send to blast
MDHEARSRNK FVNMKSQRVK VEGSFAPALE DETETIEHLL AEPKSEYVTV DGVLCCGKEN  60
AGKCVDIEDF SCGYDFGLNT YSGLHSAHPR GRYDELEFGV LDGLLDEVDE VEDIHAINGL  120
ASPCDDYLLD IGFTGKASEL GFGPCEKSHL GNSSSESQSP RLSGSSNGAV GISESSTVTI  180
QEFECKNNSI DKAVTHEFHG GFRRKKRRRT PVEGNVYPAS INLQNLELDN DEKTLVKEIV  240
SGENEKLSVE ATKLGAFCKE KRLRKPTLRY IEEFSGKKSK DSNERENCSA LTATQDRSKV  300
RCQNEHHHMS PGILSSVPEE DSISENQTLA EFRTQRKLAK KHASILALES DEQPITSESE  360
DDHVPKKRSR KHDRRKHQRM WTLSEVTTLV DGISEYGVGR WTDIKRVLFS SSAYRTPIDL  420
RDKWRNLLRA SCGKKMKKEV EQKEMRALPK SLVRRVRELA TVHPYPRQRG KKFAPPILPT  480
PSKSASSDLI RKYVRRKNRS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1202208RRKKRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008243960.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008243960.10.0PREDICTED: uncharacterized protein LOC103342147 isoform X2
TrEMBLA0A251NUQ90.0A0A251NUQ9_PRUPE; Uncharacterized protein
STRINGXP_008243959.10.0(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.12e-19TRF-like 6