PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008243959.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB_related
Protein Properties Length: 501aa    MW: 56482.5 Da    PI: 8.3449
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008243959.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.74.6e-07382429448
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                      WT  E   lvd++ ++G g+W+ I r +      Rt+ +++++w+++l
   XP_008243959.1 382 WTLSEVTTLVDGISEYGVGRWTDIKRVLFsssAYRTPIDLRDKWRNLL 429
                      ****************************9***99************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.603374433IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.7E-10374433IPR009057Homeodomain-like
SuperFamilySSF466895.31E-15376453IPR009057Homeodomain-like
SMARTSM007171.1E-7378431IPR001005SANT/Myb domain
CDDcd116601.02E-16380430No hitNo description
PfamPF139215.5E-5382435No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 501 aa     Download sequence    Send to blast
MDHEARSRNK FVNMKSQRVK VEGSFAPALE DETETIEHLL AEPKSEYVTV DGVLCCGKEN  60
AGKCVDIEDF SCGYDFGLNT YSGGLHSAHP RGRYDELEFG VLDGLLDEVD EVEDIHAING  120
LASPCDDYLL DIGFTGKASE LGFGPCEKSH LGNSSSESQS PRLSGSSNGA VGISESSTVT  180
IQEFECKNNS IDKAVTHEFH GGFRRKKRRR TPVEGNVYPA SINLQNLELD NDEKTLVKEI  240
VSGENEKLSV EATKLGAFCK EKRLRKPTLR YIEEFSGKKS KDSNERENCS ALTATQDRSK  300
VRCQNEHHHM SPGILSSVPE EDSISENQTL AEFRTQRKLA KKHASILALE SDEQPITSES  360
EDDHVPKKRS RKHDRRKHQR MWTLSEVTTL VDGISEYGVG RWTDIKRVLF SSSAYRTPID  420
LRDKWRNLLR ASCGKKMKKE VEQKEMRALP KSLVRRVREL ATVHPYPRQR GKKFAPPILP  480
TPSKSASSDL IRKYVRRKNR S
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1203209RRKKRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008243959.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008243959.10.0PREDICTED: uncharacterized protein LOC103342147 isoform X1
TrEMBLA0A251NUQ90.0A0A251NUQ9_PRUPE; Uncharacterized protein
STRINGXP_008243959.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47162639
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.12e-19TRF-like 6