PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008243945.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family ARF
Protein Properties Length: 701aa    MW: 77164.3 Da    PI: 6.7818
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008243945.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.31.4e-23121222199
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f k+lt+sd+++ g +++p+ +ae++         ++ +  t+  +d +g++W++++iyr++++r++lt+GW+ Fv+ ++L +gD++vF   + +
  XP_008243945.1 121 FAKTLTQSDANNGGGFSVPRYCAETIfprldysADPPVQ--TILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDSIVFL--RAE 211
                     89****************************996555555..89***********************************************..448 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     ++ l+v+++r+
  XP_008243945.1 212 NGDLCVGIRRA 222
                     8999****997 PP
2Auxin_resp114.21.2e-37290373183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                     aa+ as++++FevvY+Prast+eF+vk++ v++al++++++GmRfkmafetedss++++ +Gt+++v+ ++p+rWp+S+Wr+L+
  XP_008243945.1 290 AATLASNGQPFEVVYYPRASTPEFCVKASLVKAALQIRWCPGMRFKMAFETEDSSRISWfMGTISSVQLAEPLRWPESPWRLLQ 373
                     6899******************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.0E-37115225IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.41E-29117224IPR015300DNA-binding pseudobarrel domain
CDDcd100172.49E-21120221No hitNo description
PfamPF023628.8E-22121222IPR003340B3 DNA binding domain
PROSITE profilePS5086313.112121223IPR003340B3 DNA binding domain
SMARTSM010191.7E-21121223IPR003340B3 DNA binding domain
PfamPF065071.2E-32290373IPR010525Auxin response factor
PROSITE profilePS5174522.3615695IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007389Biological Processpattern specification process
GO:0009733Biological Processresponse to auxin
GO:0048829Biological Processroot cap development
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 701 aa     Download sequence    Send to blast
MITFMDSKEK LEEGEKCLDP QLWHACAGGM VQMPPVNAKV FYFPQGHAEH ACGPVDFRNC  60
PRVPPYIFCR VSAIKFMADP ETDEVYAKIR LVPSSASEAG YEDDGIGGLN GSETPDKPAS  120
FAKTLTQSDA NNGGGFSVPR YCAETIFPRL DYSADPPVQT ILAKDVHGET WKFRHIYRGT  180
PRRHLLTTGW STFVNHKKLV AGDSIVFLRA ENGDLCVGIR RAKRGIGGGP ESSSGWNPTG  240
GNCTMPYGGY SAFLRDDENK LMRNGNGNGS NSNGSLMGKG KVRPESVFEA ATLASNGQPF  300
EVVYYPRAST PEFCVKASLV KAALQIRWCP GMRFKMAFET EDSSRISWFM GTISSVQLAE  360
PLRWPESPWR LLQVTWDEPD LLQNVKRVSP WLVELVSNMP AIHLTPFSPP RKKMRLPQHP  420
DFPFEGQLPM PTFSGNLLGP SSPFGCLPDK TPAGMQGARH GHYGLSLSDM HLNKLQTGLF  480
PASFTPLDHA ATATKFSNNT MTQKPTMSEN VSCLLTMAHS TQTSKKPDDV KPPQLVLFGK  540
PILTEQQISL SCSGDTVSPV LTGNSSSDGN AEKTTNLSDN SGSALHQQSL QERSYCEGFQ  600
WYKVTRQETE SSLETGHCKV FMESEDVGRT LDLSVFGSYD ELYRKLADMF GIENSETLNH  660
VLYRDATGAV KHIGDEPLSD FMKTARRLTI LMDSGSNNVG M
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A4e-811839451388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00461DAPTransfer from AT4G30080Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008243945.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ1774220.0FJ177422.1 Malus x domestica putative auxin response factor ARF16 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008243945.10.0PREDICTED: auxin response factor 18-like isoform X2
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A314ZP650.0A0A314ZP65_PRUYE; Auxin response factor
STRINGXP_008243942.10.0(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]