PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008243820.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family YABBY
Protein Properties Length: 179aa    MW: 19560.2 Da    PI: 8.4964
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008243820.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY145.26.5e-45131574163
           YABBY   4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvss 98 
                     ++ se++Cyv+CnfC+t+lav +P++ l+ +vtv+CGhC++l  ++ + a q +  ++h            l  +   ++  + ++ ++ +s ss
  XP_008243820.1  13 NQPSEHLCYVRCNFCSTVLAVGLPFKRLLDTVTVKCGHCSNLSFLSTRPALQGQCLSDH---------PTSLTLQAGCCS--DFRKGQS-SSSSS 95 
                     5789*************************************988777777776666666.........222222222222..2222222.22222 PP

           YABBY  99 eklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahf 163
                        + +++ ++p++p v++PPek+ r Psaynrf+keeiqrika+nP+i hreafsaaaknWa +
  XP_008243820.1  96 ---PISSEPSSPKAPFVVKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKNWARY 157
                     ...234566789999************************************************76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046904.1E-5415157IPR006780YABBY protein
SuperFamilySSF470957.46E-9101155IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.103.1E-5111156IPR009071High mobility group box domain
CDDcd013903.29E-6118154No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010254Biological Processnectary development
GO:0010582Biological Processfloral meristem determinacy
GO:0048479Biological Processstyle development
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MNLEEKVTMD LINQPSEHLC YVRCNFCSTV LAVGLPFKRL LDTVTVKCGH CSNLSFLSTR  60
PALQGQCLSD HPTSLTLQAG CCSDFRKGQS SSSSSPISSE PSSPKAPFVV KPPEKKHRLP  120
SAYNRFMKEE IQRIKAANPE IPHREAFSAA AKNWARYIPS PSAGSDSGSC SSTNNILQE
Functional Description ? help Back to Top
Source Description
UniProtRegulates carpel specification in flower development. Severe or intermediate mutation in DL causes complete or partial homeotic conversion of carpels into stamens without affecting the identities of other floral organs. Interacts antagonistically with class B genes and controls floral meristem determinacy. Regulates midrib formation in leaves probably by inducing cell proliferation in the central region of the leaf. {ECO:0000269|PubMed:14729915}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00220DAPTransfer from AT1G69180Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008243820.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB6272501e-123AB627250.1 Malus x domestica mRNA, microsatellite: MEST098, clone: FLW01_10_E08.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008243820.11e-131PREDICTED: protein CRABS CLAW isoform X2
SwissprotQ76EJ02e-65YABDL_ORYSJ; Protein DROOPING LEAF
TrEMBLA0A251R4V91e-129A0A251R4V9_PRUPE; Uncharacterized protein
STRINGXP_008243820.11e-130(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69180.15e-63YABBY family protein