PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008243794.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 335aa    MW: 36889.6 Da    PI: 6.1871
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008243794.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.43e-144594255
                    HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                    r +h+  E+rRR++iN++f+ Lr+l+P++    ++K + a+   +++eY+++Lq
  XP_008243794.1 45 RSKHSVTEQRRRSKINERFQILRDLIPHS----DQKRDTASFFWQVIEYVQYLQ 94
                    899*************************9....8*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.36E-1741115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.6E-2142115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.9324393IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.76E-124598No hitNo description
PfamPF000101.2E-114594IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.6E-94999IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MRTAAKGNQE EDDYDDEEFG SRKEGPSSNS NSKDAKNNDK ASAIRSKHSV TEQRRRSKIN  60
ERFQILRDLI PHSDQKRDTA SFFWQVIEYV QYLQEKVHKY EGSYQGWSPE PTKLMPWRNS  120
HWRVQSFVGH PQAGKNDTGA VSPFPGKFDE NSISITPSML ANSTQNPVES DPSRDVASKI  180
MDRQPEIVNK AIPLPMPLPV NMTAPVRSDG ILAHPLQGPV SDAQSTQCPP TSAIDALNQQ  240
EELTIEGGTI SISSVYSQGL LNSLNEALQS AGVDLSQASV SVQIDLGNRV NRGLSSGTPA  300
SKDHEIPHSS NQTVAHFRDA GSGEDSDQAH KRMKT
Functional Description ? help Back to Top
Source Description
UniProtPositive brassinosteroid-signaling protein.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00219DAPTransfer from AT1G69010Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008243794.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008243794.10.0PREDICTED: transcription factor BIM2
SwissprotQ9CAA41e-116BIM2_ARATH; Transcription factor BIM2
TrEMBLM5XCV50.0M5XCV5_PRUPE; Uncharacterized protein
STRINGXP_008243794.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17303382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.11e-108BES1-interacting Myc-like protein 2
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]