PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008243620.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family C3H
Protein Properties Length: 302aa    MW: 31998.1 Da    PI: 9.694
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008243620.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.81.8e-08105130227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     kt+lC+ +     Ck+Gd+C+FaHg+
  XP_008243620.1 105 KTRLCNKYNTVEGCKFGDKCHFAHGE 130
                     8*********99************96 PP
2zf-CCCH36.39.5e-12269294127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     +kt+lC +f + GtC +GdrC+FaHgp
  XP_008243620.1 269 FKTKLCENFTK-GTCTFGDRCHFAHGP 294
                     69*********.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.0423866IPR000571Zinc finger, CCCH-type
SMARTSM003561.73865IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.41E-63964IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.9E-74063IPR000571Zinc finger, CCCH-type
PfamPF146081.84663No hitNo description
Gene3DG3DSA:4.10.1000.103.7E-14101134IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-8102134IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.704103131IPR000571Zinc finger, CCCH-type
SMARTSM003569.8E-4103130IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-5105130IPR000571Zinc finger, CCCH-type
SuperFamilySSF547912.13E-14169245IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.101.2E-15174244IPR004088K Homology domain, type 1
SMARTSM003222.9E-11174244IPR004087K Homology domain
PROSITE profilePS5008413.963175239IPR004088K Homology domain, type 1
CDDcd001051.94E-14177239No hitNo description
PfamPF000133.2E-11177241IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.101.5E-16266298IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.32E-9267298IPR000571Zinc finger, CCCH-type
SMARTSM003563.4E-8268294IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010317.469268295IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-9269294IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MDFGGGRKRG RPEAASFNGN GGFKKSKPEM ESFTTGIGSK SKPCTKFFST SGCPFGEGCH  60
FLHYVPGGIK AVSQMTGSNP TLPLPPRNSA APPSFPDGSS PPSVKTRLCN KYNTVEGCKF  120
GDKCHFAHGE WELGRPTAQS YEDPRGGGGY PGRMGGGRME PPPQTHGAAA RFGATATAKI  180
SVDASLAGAI IGKNGVNSKQ ICRVTGAKLS IREHESDPKL RNIELEGTFD QIKDASAMVR  240
ELIVNVSSAA GPHMRNNPGM AASAPASNFK TKLCENFTKG TCTFGDRCHF AHGPEELRRQ  300
GM
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008243620.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1425213e-52BT142521.1 Lotus japonicus clone JCVI-FLLj-16L24 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008243620.10.0PREDICTED: zinc finger CCCH domain-containing protein 14-like
SwissprotQ7F8R01e-114C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLM5WJ430.0M5WJ43_PRUPE; Uncharacterized protein
STRINGXP_008243620.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF146232102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.19e-52C3H family protein