PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008243490.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family TCP
Protein Properties Length: 454aa    MW: 49716.6 Da    PI: 6.593
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008243490.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP54.64.4e-173791458
             TCP  4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpa 58
                     ++r  + h+ v+gR RRvR++++c   +F L++eLG+ +d+ ti+WLl q  p+
  XP_008243490.1 37 ERRRYIDKHSTVNGRHRRVRIPVTCCPGIFRLTQELGHRSDGDTIQWLLSQVRPE 91
                    5678889********************************************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136912.6464195IPR017887Transcription factor TCP subgroup
PfamPF036341.5E-134391IPR005333Transcription factor, TCP
Gene3DG3DSA:3.60.110.102.0E-55137410IPR003010Carbon-nitrogen hydrolase
SuperFamilySSF563171.02E-54137411IPR003010Carbon-nitrogen hydrolase
CDDcd075642.66E-100138443No hitNo description
PROSITE profilePS5026332.87138433IPR003010Carbon-nitrogen hydrolase
PfamPF007959.9E-47139407IPR003010Carbon-nitrogen hydrolase
PROSITE patternPS009200170185IPR000132Nitrilase/cyanide hydratase, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006807Biological Processnitrogen compound metabolic process
GO:0016810Molecular Functionhydrolase activity, acting on carbon-nitrogen (but not peptide) bonds
Sequence ? help Back to Top
Protein Sequence    Length: 454 aa     Download sequence    Send to blast
MEINQTLPTN TLAITDPPEN PSLQTQPPQQ EEQQQLERRR YIDKHSTVNG RHRRVRIPVT  60
CCPGIFRLTQ ELGHRSDGDT IQWLLSQVRP ELVLPPQPNN RTRRLPPDPV PQPNCRYPGA  120
AEDWLDHKAV ARLPSVTVRA TVVQASTVFF DTPATLDKAE RLVAGAAAYG SQLVVFPEAF  180
VGGYPRGLMF DSATATLSPE EKQAFEKYYA SAIDVPGPEV DRLAKIASKY KVHLVMGVVE  240
RVGFYLCSTV LFFDSFGQCL GKHPKLLPLA SESPVWCSGP KLPVSVYDTE IGRIGGLVCW  300
DNRMPDLRTQ LYGKAEAREI WRSSMTHIAL EGGCFVLSAN QFCRRKDYPL PLECVSGDSN  360
DATSLDIICA GGSVIVSPSG TILAGPNYQG ESLISADLDL VEIARAKLEF GGVGLGHNAG  420
PNAVGWRRTS IPNPDLFAAT VKTEVSDHAN VLYA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3wuy_A2e-3013842216302Nitrilase
3wuy_B2e-3013842216302Nitrilase
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtHighly specific for beta-cyano-L-alanine (Ala(CN)). Low activity with 3-phenylpropionitrile (PPN). Not associated with auxin production but may be involved in cyanide detoxification. {ECO:0000269|PubMed:10574458, ECO:0000269|PubMed:11060302}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008243490.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced by abscisic acid or by 1-aminocyclopropane-1-carboxylic acid (ACC). {ECO:0000269|PubMed:10574458}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008243490.10.0PREDICTED: bifunctional nitrilase/nitrile hydratase NIT4B-like isoform X2
SwissprotQ429661e-127NRL4B_TOBAC; Bifunctional nitrilase/nitrile hydratase NIT4B
TrEMBLA0A251N9I70.0A0A251N9I7_PRUPE; Uncharacterized protein
STRINGXP_008243489.10.0(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23280.14e-16TCP family protein
Publications ? help Back to Top
  1. Dohmoto M,Sano J,Tsunoda H,Yamaguchi K
    Structural analysis of the TNIT4 genes encoding nitrilase-like protein from tobacco.
    DNA Res., 1999. 6(5): p. 313-7
    [PMID:10574458]
  2. Piotrowski M,Schönfelder S,Weiler EW
    The Arabidopsis thaliana isogene NIT4 and its orthologs in tobacco encode beta-cyano-L-alanine hydratase/nitrilase.
    J. Biol. Chem., 2001. 276(4): p. 2616-21
    [PMID:11060302]