PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_008243489.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

TCP

Protein Properties

Length: 463aa MW: 50664.7 Da PI: 6.4203

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_008243489.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	54.6	4.5e-17	37	91	4	58
TCP 4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpa 58 ++r + h+ v+gR RRvR++++c +F L++eLG+ +d+ ti+WLl q p+ XP_008243489.1 37 ERRRYIDKHSTVNGRHRRVRIPVTCCPGIFRLTQELGHRSDGDTIQWLLSQVRPE 91 5678889********************************************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	12.646	41	95	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	1.6E-13	43	91	IPR005333	Transcription factor, TCP
Gene3D	G3DSA:3.60.110.10	2.8E-64	137	419	IPR003010	Carbon-nitrogen hydrolase
SuperFamily	SSF56317	5.36E-61	137	420	IPR003010	Carbon-nitrogen hydrolase
PROSITE profile	PS50263	38.542	138	442	IPR003010	Carbon-nitrogen hydrolase
CDD	cd07564	1.00E-107	138	452	No hit	No description
Pfam	PF00795	2.1E-53	139	416	IPR003010	Carbon-nitrogen hydrolase
PROSITE pattern	PS00920	0	170	185	IPR000132	Nitrilase/cyanide hydratase, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006807	Biological Process	nitrogen compound metabolic process
GO:0016810	Molecular Function	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds

Sequence ? help Back to Top
Protein Sequence Length: 463 aa Download sequence Send to blast
MEINQTLPTN TLAITDPPEN PSLQTQPPQQ EEQQQLERRR YIDKHSTVNG RHRRVRIPVT 60 CCPGIFRLTQ ELGHRSDGDT IQWLLSQVRP ELVLPPQPNN RTRRLPPDPV PQPNCRYPGA 120 AEDWLDHKAV ARLPSVTVRA TVVQASTVFF DTPATLDKAE RLVAGAAAYG SQLVVFPEAF 180 VGGYPRGLMF DSATATLSPE EKQAFEKYYA SAIDVPGPEV DRLAKIASKY KVHLVMGVVE 240 RVGFYLCSTV LFFDSFGQCL GKHPKLLPLA SESPVWCSGP KLPVSVYDTE IGRIGGLVCW 300 DNRMPDLRTQ LYGKGIEIYC APTAEAREIW RSSMTHIALE GGCFVLSANQ FCRRKDYPLP 360 LECVSGDSND ATSLDIICAG GSVIVSPSGT ILAGPNYQGE SLISADLDLV EIARAKLEFG 420 GVGLGHNAGP NAVGWRRTSI PNPDLFAATV KTEVSDHANV LYA

Sequence ? help Back to Top

Protein Sequence Length: 463 aa Download sequence Send to blast

MEINQTLPTN TLAITDPPEN PSLQTQPPQQ EEQQQLERRR YIDKHSTVNG RHRRVRIPVT  60
CCPGIFRLTQ ELGHRSDGDT IQWLLSQVRP ELVLPPQPNN RTRRLPPDPV PQPNCRYPGA  120
AEDWLDHKAV ARLPSVTVRA TVVQASTVFF DTPATLDKAE RLVAGAAAYG SQLVVFPEAF  180
VGGYPRGLMF DSATATLSPE EKQAFEKYYA SAIDVPGPEV DRLAKIASKY KVHLVMGVVE  240
RVGFYLCSTV LFFDSFGQCL GKHPKLLPLA SESPVWCSGP KLPVSVYDTE IGRIGGLVCW  300
DNRMPDLRTQ LYGKGIEIYC APTAEAREIW RSSMTHIALE GGCFVLSANQ FCRRKDYPLP  360
LECVSGDSND ATSLDIICAG GSVIVSPSGT ILAGPNYQGE SLISADLDLV EIARAKLEFG  420
GVGLGHNAGP NAVGWRRTSI PNPDLFAATV KTEVSDHANV LYA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3wuy_A	2e-33	137	431	15	302	Nitrilase
3wuy_B	2e-33	137	431	15	302	Nitrilase
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Highly specific for beta-cyano-L-alanine (Ala(CN)). Low activity with 3-phenylpropionitrile (PPN). Not associated with auxin production but may be involved in cyanide detoxification. {ECO:0000269\|PubMed:10574458, ECO:0000269\|PubMed:11060302}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_008243489.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not induced by abscisic acid or by 1-aminocyclopropane-1-carboxylic acid (ACC). {ECO:0000269\|PubMed:10574458}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008243489.1	0.0	PREDICTED: bifunctional nitrilase/nitrile hydratase NIT4B-like isoform X1
Swissprot	Q42966	1e-138	NRL4B_TOBAC; Bifunctional nitrilase/nitrile hydratase NIT4B
TrEMBL	A0A251N9I7	0.0	A0A251N9I7_PRUPE; Uncharacterized protein
STRING	XP_008243489.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4583	8	8

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	4e-16	TCP family protein

Publications ? help Back to Top
Dohmoto M,Sano J,Tsunoda H,Yamaguchi K Structural analysis of the TNIT4 genes encoding nitrilase-like protein from tobacco. DNA Res., 1999. 6(5): p. 313-7 [PMID:10574458] Piotrowski M,Schönfelder S,Weiler EW The Arabidopsis thaliana isogene NIT4 and its orthologs in tobacco encode beta-cyano-L-alanine hydratase/nitrilase. J. Biol. Chem., 2001. 276(4): p. 2616-21 [PMID:11060302]