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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | XP_008243431.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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| Family | FAR1 | ||||||||
| Protein Properties | Length: 288aa MW: 33656.4 Da PI: 5.9772 | ||||||||
| Description | FAR1 family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | FAR1 | 23.7 | 1.6e-07 | 3 | 42 | 52 | 90 |
FAR1 52 rrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90
r+++a tr +C a++ v ek +++++vt++e +HnH+l+
XP_008243431.1 3 RSPKAITRENCSARFWVGYEKkRDVYVVTNFEPHHNHQLV 42
678899************99989***************97 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Pfam | PF03101 | 3.9E-5 | 3 | 42 | IPR004330 | FAR1 DNA binding domain |
| Pfam | PF10551 | 3.6E-28 | 164 | 258 | IPR018289 | MULE transposase domain |
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 288 aa Download sequence Send to blast |
MIRSPKAITR ENCSARFWVG YEKKRDVYVV TNFEPHHNHQ LVSPLESPYL RFNRVVRNSD 60 LAQAVGMRRT LFITCQTYEY IVNQCGGYLN VGFQIKDMYN KLDASRREIL LDDNTEAALS 120 YLKAKGAMDP EFFCKFSVDD ENRLGNLFWR DSTSLLNYIA YDDVLIFNST YQTNVYDKPL 180 VLFVGSNNYR STVMFGCALL QDEIFETYKW LLETFMVSMK DKKPISILTD GVEAMHKAID 240 DVFPMSNHRL CSWHVSRNAQ DNLKDDELLR NLQACIWEPF ALDEFEKK |
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | XP_008243431.1 |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_008243431.1 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 5-like | ||||
| TrEMBL | M5WQ97 | 1e-178 | M5WQ97_PRUPE; Uncharacterized protein | ||||
| STRING | XP_008243431.1 | 0.0 | (Prunus mume) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Fabids | OGEF3265 | 7 | 34 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT4G38180.1 | 4e-43 | FAR1-related sequence 5 | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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