PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008243405.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family TCP
Protein Properties Length: 502aa    MW: 55731.5 Da    PI: 8.6688
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008243405.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP139.72.3e-431673193133
             TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.......................ssssa...s 71 
                     g kdrhski+T++g+RdRR+Rls+++a++fFdLqd+LGfdk+sktieWL++++k++ikel +                        +   a   s
  XP_008243405.1 167 GNKDRHSKIYTAQGPRDRRMRLSLQIARKFFDLQDMLGFDKASKTIEWLFTKSKTSIKELKQHlnisplaayscstnanatststiT---AkmnS 258
                     78*************************************************************999999999987665543332221...11111 PP

             TCP  72 eceaesssssasnsssg.......kaaksaakskksqksaasalnlakesrakarararertrekmrik 133
                     +++++s++        +       +    +  + +++k++ +   +a+esr +arararertrekm+ +
  XP_008243405.1 259 STSENSEV--------AskiqetaNGDVHSIGTLERDKKNRKLCVVARESRVEARARARERTREKMMRT 319
                     22222222........23444443333333333333333333677888******************865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.5E-42167318IPR005333Transcription factor, TCP
PROSITE profilePS5136937.253168226IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137011.048298315IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000032Biological Processregulation of secondary shoot formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 502 aa     Download sequence    Send to blast
MFPSSSSASN YQLPFPCDTN QQPQLLEKSS TNIIDQHGHE NPNSISHDDH HIRQYYSHYS  60
EDHQQQAPNN FLEHDGLLLS YLLSQQQLLV GSSSPNMNSA TSHHVQVHDT TEISVVASNS  120
NKKVMDRVDE GRTAPAATSK GCSSKKKSNT SNGESKNPKA PRKRSSGNKD RHSKIYTAQG  180
PRDRRMRLSL QIARKFFDLQ DMLGFDKASK TIEWLFTKSK TSIKELKQHL NISPLAAYSC  240
STNANATSTS TITAKMNSST SENSEVASKI QETANGDVHS IGTLERDKKN RKLCVVARES  300
RVEARARARE RTREKMMRTR SGLDQYQNLR KQSPDHDQVP QNPNNDQFSG GHYLWSSNCP  360
NDQLFEPGMM MNSMVMSINH HDEKVVGSTT IPSGANSEDY DFPSFPGNWG QINNSKNITG  420
NNVLQVDPNP SNSSTMATAP PTSYPLEQKP SSVFMSTSSS MHEQNPSSIF VTTLIAEDQN  480
PTTSSNFGTN SSIVLKSHFL GN
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008243405.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008243405.10.0PREDICTED: transcription factor TCP18
TrEMBLA0A251R8830.0A0A251R883_PRUPE; Uncharacterized protein
STRINGXP_008243405.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17383294
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.11e-32TCP domain protein 12