PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_008243254.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

bHLH

Protein Properties

Length: 230aa MW: 25863.8 Da PI: 5.8415

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_008243254.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	25	3.4e-08	116	163	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++iN+++ L+ l+P + k + a +L ++ Y++sLq XP_008243254.1 116 SHSLAERVRREKINERLRCLQNLVPGC----YKTMGMAVMLDVVISYVQSLQ 163 8*************************8....355888999999999999998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.31E-16	110	181	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.99E-11	110	167	No hit	No description
Gene3D	G3DSA:4.10.280.10	8.8E-16	112	173	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.212	112	162	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.2E-5	116	163	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.3E-8	118	168	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 230 aa Download sequence Send to blast
MELIDNLCEL ENLSANHHEI MALSNGMSFS DHQRQTNQLP LNFIQDNIQS FSHSDDPNHD 60 VLVAHSTSLT GDFAQESEKG KPLGGRKRKR NNIDKDGEKL KEVIHVRAKR GQATDSHSLA 120 ERVRREKINE RLRCLQNLVP GCYKTMGMAV MLDVVISYVQ SLQNQIEFLS MKLSAASVYY 180 DFNSPGVDAL DTMQQQGTNN AYGEVQEEMV RSEGYGGGLS NYNNNSTWPI

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_008243254.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008243254.1	1e-174	PREDICTED: transcription factor bHLH75-like isoform X4
Swissprot	A4D998	4e-50	BH075_ARATH; Transcription factor bHLH75
TrEMBL	M5XU04	1e-162	M5XU04_PRUPE; Uncharacterized protein
STRING	XP_008243251.1	1e-169	(Prunus mume)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25330.1	3e-51	bHLH family protein

Publications ? help Back to Top
Khan M, et al. Interplay between phosphorylation and SUMOylation events determines CESTA protein fate in brassinosteroid signalling. Nat Commun, 2014. 5: p. 4687 [PMID:25134617] Eremina M, et al. Brassinosteroids participate in the control of basal and acquired freezing tolerance of plants. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(40): p. E5982-E5991 [PMID:27655893] Pfannebecker KC,Lange M,Rupp O,Becker A Seed Plant-Specific Gene Lineages Involved in Carpel Development. Mol. Biol. Evol., 2017. 34(4): p. 925-942 [PMID:28087776]