PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_008243228.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | LBD | ||||||||
Protein Properties | Length: 218aa MW: 23234.4 Da PI: 8.5861 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 86 | 5.2e-27 | 4 | 108 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +C++C+vlr++C+++C ++p + p++q++++ +++k++G++ +l+l++a ++ r+++++sl+yeA+ r+ +P G+vg+++++++ +q+ XP_008243228.1 4 SCNGCRVLRKGCSEKCSIRPSIewiksPDSQANATLFLAKFYGRAGLLNLINAGAQHLRPAIFKSLLYEACGRIVNPTFGSVGLMSSGSWAQCQA 98 6********************************************************************************************** PP DUF260 91 kaelallkee 100 +++++l++++ XP_008243228.1 99 AVDAVLAGSP 108 **99988765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 15.085 | 3 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 8.7E-21 | 4 | 103 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 218 aa Download sequence Send to blast |
MRMSCNGCRV LRKGCSEKCS IRPSIEWIKS PDSQANATLF LAKFYGRAGL LNLINAGAQH 60 LRPAIFKSLL YEACGRIVNP TFGSVGLMSS GSWAQCQAAV DAVLAGSPIS GLDADALNLI 120 PSPPNTSGDI RHVFRDSNSG ASRNKVATRN RFKRSMNKSK THPGSLTDFA TGSHMAQFCN 180 FPDPDDLCPS PEGNGAGGDY DGEVGLELTL GLVPMRLN |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_008243228.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008243228.1 | 1e-161 | PREDICTED: LOB domain-containing protein 42-like | ||||
Swissprot | Q9M886 | 3e-68 | LBD41_ARATH; LOB domain-containing protein 41 | ||||
TrEMBL | M5XZ87 | 1e-155 | M5XZ87_PRUPE; Uncharacterized protein | ||||
STRING | XP_008243228.1 | 1e-160 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1546 | 34 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02550.1 | 2e-69 | LOB domain-containing protein 41 |