PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_008243158.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | G2-like | ||||||||
Protein Properties | Length: 339aa MW: 38330.3 Da PI: 7.7175 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 101.5 | 5.3e-32 | 67 | 120 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH rF++ave+LGG+e+AtPk +l+lm++kgL+++hvkSHLQ+YR+ XP_008243158.1 67 PRLRWTPDLHLRFIHAVERLGGQERATPKLVLQLMNIKGLSIAHVKSHLQMYRS 120 8****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 8.9E-30 | 63 | 121 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 12.685 | 63 | 123 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.47E-14 | 65 | 121 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 9.3E-23 | 67 | 122 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 9.8E-10 | 68 | 119 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 339 aa Download sequence Send to blast |
MEGDSDSSKT SPSGEQNEGG SESGENYDDI EESGKPKNNG GSSSNSTVEE SDQRKASVRP 60 YVRSKMPRLR WTPDLHLRFI HAVERLGGQE RATPKLVLQL MNIKGLSIAH VKSHLQMYRS 120 KKIDDAGQVL ADHQGHLVEC GDKNIYNLSQ LPMLQGYNRS HSTSFRYGDA KSWTAYENPR 180 YPRSTGFQGN WSSSSAYNYL TTCSFGEQSS WIARTLKQEC QLYNIRESLQ AQHQHQARLS 240 QQLIDLNPTN THVQVQHKPK ELITSFNNSN NLELTSKKNE DHQSKSLKRK ASDCEDLDLD 300 LSLRLTSRNK NEDDIHEVDS SLSLSLYSPP SSKLSRLKE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 3e-17 | 68 | 122 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 3e-17 | 68 | 122 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 3e-17 | 68 | 122 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 3e-17 | 68 | 122 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 3e-17 | 68 | 122 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 3e-17 | 68 | 122 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 3e-17 | 68 | 122 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 3e-17 | 68 | 122 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 3e-17 | 68 | 122 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 3e-17 | 68 | 122 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 3e-17 | 68 | 122 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 3e-17 | 68 | 122 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00297 | DAP | Transfer from AT2G38300 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_008243158.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008243158.1 | 0.0 | PREDICTED: transcription repressor KAN1-like | ||||
TrEMBL | A0A251NWW3 | 0.0 | A0A251NWW3_PRUPE; Uncharacterized protein | ||||
STRING | XP_008243158.1 | 0.0 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2378 | 34 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38300.1 | 6e-62 | G2-like family protein |