PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_008242985.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

WRKY

Protein Properties

Length: 387aa MW: 43189.3 Da PI: 4.5486

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_008242985.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	76.9	2.4e-24	221	277	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +DgynWrKYGqK+vk+ + +rsYYrCt+++C +kk +e++++ + v+ei+Y+++H+he XP_008242985.1 221 SDGYNWRKYGQKQVKSPQGSRSYYRCTYSECYAKK-IECCDHSGYVTEIVYKSQHTHE 277 7******************************98.*******************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.6E-20	217	279	IPR003657	WRKY domain
SuperFamily	SSF118290	7.45E-20	219	279	IPR003657	WRKY domain
SMART	SM00774	1.3E-22	220	278	IPR003657	WRKY domain
PROSITE profile	PS50811	16.937	221	279	IPR003657	WRKY domain
Pfam	PF03106	2.7E-17	222	277	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 387 aa Download sequence Send to blast
MAEHESFDAL QVEKLKPNEQ EQEEDEEGDE DEDEDEEGKR LGEIHLGELQ NSAPESRETQ 60 LETLAVPSTL ELSENDQCAG FQVNSTSQSI DGAQLQEQLG VSHQEILAIV THQDSQMQTQ 120 SPVQLAVYPT PLSELSPTSV TQSIQTQTQS PLQLTVYPTP LSELSPTSVT QSISSAPSPI 180 LLEQKLPPEK VNTLCTPEVD KQNSSDHKFI SSVPLVKTSA SDGYNWRKYG QKQVKSPQGS 240 RSYYRCTYSE CYAKKIECCD HSGYVTEIVY KSQHTHEPPQ KSNCTKESKL ALSAECVRNS 300 VTEHPCRTFN DSEVSTSSKE RIQETPSIPE RKRQSPSDSD GNGDVKIKEE HGDGDEPEPK 360 RRVKKSNLEH ASTSHIVFVW GWGWGWV

Sequence ? help Back to Top

Protein Sequence Length: 387 aa Download sequence Send to blast

MAEHESFDAL QVEKLKPNEQ EQEEDEEGDE DEDEDEEGKR LGEIHLGELQ NSAPESRETQ  60
LETLAVPSTL ELSENDQCAG FQVNSTSQSI DGAQLQEQLG VSHQEILAIV THQDSQMQTQ  120
SPVQLAVYPT PLSELSPTSV TQSIQTQTQS PLQLTVYPTP LSELSPTSVT QSISSAPSPI  180
LLEQKLPPEK VNTLCTPEVD KQNSSDHKFI SSVPLVKTSA SDGYNWRKYG QKQVKSPQGS  240
RSYYRCTYSE CYAKKIECCD HSGYVTEIVY KSQHTHEPPQ KSNCTKESKL ALSAECVRNS  300
VTEHPCRTFN DSEVSTSSKE RIQETPSIPE RKRQSPSDSD GNGDVKIKEE HGDGDEPEPK  360
RRVKKSNLEH ASTSHIVFVW GWGWGWV

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_008242985.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008242985.1	0.0	PREDICTED: probable WRKY transcription factor 32
TrEMBL	M5W7R3	0.0	M5W7R3_PRUPE; Uncharacterized protein
STRING	XP_008242985.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5198	34	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G30935.1	2e-36	WRKY DNA-binding protein 32