PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008242739.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family C3H
Protein Properties Length: 543aa    MW: 61373.4 Da    PI: 7.3865
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008242739.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.73.5e-0786107426
                     ---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                     ++C f++  G+C+ GdrC+F H+
  XP_008242739.1  86 VPCYFYFN-GFCNKGDRCSFLHD 107
                     68******.*************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.23635IPR000571Zinc finger, CCCH-type
PfamPF156631.4E-11761No hitNo description
SMARTSM003560.0067734IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.7093763IPR000571Zinc finger, CCCH-type
SMARTSM003560.263962IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-682107IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.86882109IPR000571Zinc finger, CCCH-type
SMARTSM003560.001583108IPR000571Zinc finger, CCCH-type
PfamPF006426.3E-586107IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.4E-587109IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 543 aa     Download sequence    Send to blast
MDEDLLKRNT DCVYFLASPL TCKKGVDCEF RHSKIARLNP KDCWYWLSGN CLNPTCAFRH  60
PPLDGHGGAL SSESAPSSVS ANKTIVPCYF YFNGFCNKGD RCSFLHDIEG GASTEKSPKT  120
ASAFNDTFAL SSENKASAGN DMMPGPRMAH LNPSETALKE TVDTRFQPKE DLNYFEQSAQ  180
RDVPQQSVSP QISVSGDEEA TEIRSDSLPA DGSVHSKSHS CTDQSSDEQA DDLVQEEWWE  240
SSPGFDVLVD GKSENLGCED DPECFLTLDG ERRELNSHFL GYDFENPDDY VPVCPPDAEL  300
LYERDVYDSY DFLDNKHMLG NDGKFPGYAK ETMSDAIYSR KRKLMPMELA VYDQDFLDVR  360
DRLRRRRMTD CHSITGLSRR HEALRLFGRS REMPQRHGMG WRVHGRLASE VRNSTYGSLR  420
ENGASSSAGI QRVSLRHSQQ YRPRKHHKER KLAKQKLPSS GISKKRVPRE KKSAQKSTTF  480
TGPKTLAQIK EEKKKAEENR DHIGIVRHVR RTRVDFQGPK PLNEILKEKG KIADKREGNA  540
GSN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1360366DRLRRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008242739.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008242739.10.0PREDICTED: zinc finger CCCH domain-containing protein 34-like
TrEMBLM5VQ060.0M5VQ06_PRUPE; Uncharacterized protein
STRINGXP_008242739.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130921823