PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008242700.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family G2-like
Protein Properties Length: 496aa    MW: 54334 Da    PI: 7.6014
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008242700.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like99.81.9e-31281336156
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                     k+r++W+p+LH+rFv+a++ LGGs++AtPk+i+e mkv+gLt+++vkSHLQkYRl+
  XP_008242700.1 281 KARRCWSPDLHRRFVHALQMLGGSQVATPKQIREQMKVDGLTNDEVKSHLQKYRLH 336
                     68****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.731278338IPR017930Myb domain
SuperFamilySSF466892.06E-16278339IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.3E-27279339IPR009057Homeodomain-like
TIGRFAMsTIGR015579.2E-26281336IPR006447Myb domain, plants
PfamPF002498.6E-7283334IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009266Biological Processresponse to temperature stimulus
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010452Biological Processhistone H3-K36 methylation
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:1903507Biological Processnegative regulation of nucleic acid-templated transcription
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 496 aa     Download sequence    Send to blast
MASSPSELSL DCKPHSYSML LKSFGDLQAS HHHDQSQTQK LEEFLSRLEE ERLKIDAFKR  60
ELPLSMQLLT TAVEASRQQL QAYRANIQGP NRPVLEEFIP LKHSPTEGSE KTTNTTSDKA  120
NWMTSAQLWS QASDHINATK PQSITSPKET DIGFSVSPKL GLDAKQHRSY GGGAFHPFSK  180
DRNSCPSPTL RPLPELALAS PENNKAAEML MEDKIIKSCN NSETTHENGM INSSANNGNC  240
SEQAKLLATG GINNSNISEG QTQTTTTTAT NNQSQSQTHR KARRCWSPDL HRRFVHALQM  300
LGGSQVATPK QIREQMKVDG LTNDEVKSHL QKYRLHTRRP SPNPQAAGGP TPQLVVLGGI  360
WVPPEYANAA HNGPTALYSP HPGSHAPTHY CATPMPQDFY TTPPPQQLHH HTLHHQLHVY  420
RASTTSNTHS SPESDGRGAC GRSESIEDGK SDSSSWKGAE SGGDQMNGGD HRKGGVASRR  480
SEDAEDSNGS QITLKF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A6e-13281334255Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B6e-13281334255Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A5e-13281334154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B5e-13281334154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C5e-13281334154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D5e-13281334154Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A6e-13281334255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C6e-13281334255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D6e-13281334255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F6e-13281334255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H6e-13281334255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J6e-13281334255Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor acting as a flowering repressor, directly repressing FT expression in a dosage-dependent manner in the leaf vasculature. {ECO:0000269|PubMed:25132385}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00261DAPTransfer from AT2G03500Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008242700.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by SVP. Down-regulated by high temperature and gibberellic acid treatment. Not regulated by photoperiod, circadian rhythm under long days or vernalization. {ECO:0000269|PubMed:25132385}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008242700.10.0PREDICTED: uncharacterized protein LOC103341001
SwissprotQ9ZQ851e-121EFM_ARATH; Myb family transcription factor EFM
TrEMBLM5VSS50.0M5VSS5_PRUPE; Uncharacterized protein
STRINGXP_008242700.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54663455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03500.11e-109G2-like family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]