PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_008242605.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

Trihelix

Protein Properties

Length: 361aa MW: 42455.4 Da PI: 4.5871

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_008242605.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	46.2	1.2e-14	122	206	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 Wt++ v +L+e+ ++ +l+r++l+ +W+ev++k+ ++ ++er+ +qC++ ++ l+++ykk+ke ++ +ss+++yf++++ XP_008242605.1 122 WTEHAVFVLLEVWGDRFLQLGRKSLRSEDWREVAEKVsEASKIERTDTQCRSMLDMLKRKYKKEKEKVEEM-GLNSSKWAYFKKMD 206 ***********************************777899*******************99996.89999******8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	9.8E-20	120	208	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 361 aa Download sequence Send to blast
MDDMDDDARY HSKAYSLNHH NSSGRRKINI RNTQYSRPIA NRYAEEDDDE LDEFDEGNGR 60 QDHDEEEEEE HPRGLHRNFD ADDGFERHTK KRKVKNLESN YEFAPRVRVP YRDPSSRGEE 120 DWTEHAVFVL LEVWGDRFLQ LGRKSLRSED WREVAEKVSE ASKIERTDTQ CRSMLDMLKR 180 KYKKEKEKVE EMGLNSSKWA YFKKMDMLMA SSLRQECGLA CGVDSGEYVF MNTRVYLERS 240 NGFDEMRDSP GESETDDDED GNDDQDAFPP RMGTRGGDRG EEGSSYRVLA DSIHKFGEIY 300 EKIESSKRQQ MRELEKMRKD FHKELEFQKK QILERAQVEI AKIQEADDDD ETDVSAEDLS 360 E

Sequence ? help Back to Top

Protein Sequence Length: 361 aa Download sequence Send to blast

MDDMDDDARY HSKAYSLNHH NSSGRRKINI RNTQYSRPIA NRYAEEDDDE LDEFDEGNGR  60
QDHDEEEEEE HPRGLHRNFD ADDGFERHTK KRKVKNLESN YEFAPRVRVP YRDPSSRGEE  120
DWTEHAVFVL LEVWGDRFLQ LGRKSLRSED WREVAEKVSE ASKIERTDTQ CRSMLDMLKR  180
KYKKEKEKVE EMGLNSSKWA YFKKMDMLMA SSLRQECGLA CGVDSGEYVF MNTRVYLERS  240
NGFDEMRDSP GESETDDDED GNDDQDAFPP RMGTRGGDRG EEGSSYRVLA DSIHKFGEIY  300
EKIESSKRQQ MRELEKMRKD FHKELEFQKK QILERAQVEI AKIQEADDDD ETDVSAEDLS  360
E

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	178	186	KRKYKKEKE

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_008242605.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008242605.1	0.0	PREDICTED: trihelix transcription factor ASIL2
Refseq	XP_008242606.1	0.0	PREDICTED: trihelix transcription factor ASIL2
TrEMBL	A0A251NFI8	0.0	A0A251NFI8_PRUPE; Uncharacterized protein
STRING	XP_008242605.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2441	34	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24490.1	1e-81	Trihelix family protein