PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_008242461.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | NAC | ||||||||
Protein Properties | Length: 488aa MW: 54926.9 Da PI: 7.1268 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 116.1 | 3.6e-36 | 46 | 188 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......lelee....vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk..... 79 lp+G++F+Ptd+el+ e+L++kvegk+ + + +i+ +i++++P++Lp v+ + + +fF++ +k+y+tg+rk+r+++ XP_008242461.1 46 LPAGVKFDPTDQELI-EHLEAKVEGKDtkshplI---DefipTIEGEdGICYTHPEKLP-GVTRDGLSRHFFHRPSKAYTTGTRKRRKIQtecdl 135 799************.99*********6665443...133333666646**********.555666799******************73334555 PP NAM 80 ...sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 + +W++tgk+++v++ +g+++g+kk+Lv+y g+++k+ekt+Wvmh+y+l XP_008242461.1 136 qggETRWHKTGKTRPVMV-NGKQKGCKKILVLYtnFGKNRKPEKTNWVMHQYHL 188 544778************.999***********5547999999*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.09E-38 | 42 | 207 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 32.794 | 46 | 207 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.9E-16 | 47 | 188 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 488 aa Download sequence Send to blast |
MNKSNLGSIR SSDLIDAKLE EHQLCGSKQC PGCGHKLEGK PDWLGLPAGV KFDPTDQELI 60 EHLEAKVEGK DTKSHPLIDE FIPTIEGEDG ICYTHPEKLP GVTRDGLSRH FFHRPSKAYT 120 TGTRKRRKIQ TECDLQGGET RWHKTGKTRP VMVNGKQKGC KKILVLYTNF GKNRKPEKTN 180 WVMHQYHLGQ HEEEKEGELV VSKIFYQTQP RQCNWSDRAS ATTGEGSSDI VPANSRRDSG 240 SGSCSSKEII PPHSHSHSHR EHDQMSAVAS GVAAAAPISS YSAMDIHQLK SDHFSFAPFR 300 KSFDEVGIGG EASTAREGPA SGTCEEMRGE HHHQRSVPQP HHHHHHHHMA HEVVPDHPQH 360 DQHQQQQQQL HHQQIATAFH ISRPSHPIST IISPPPLHHT SIILDQDSYS RIMLQNENFQ 420 AQQQHQQQQQ QQHHKMGARS ASGLEELIMG CTSSSNVKEE SSMPNPQEAE WMKYSSFWPD 480 PDNPDHHG |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00460 | DAP | Transfer from AT4G29230 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_008242461.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF198114 | 0.0 | KF198114.1 Malus hupehensis NAC domain protein (NAC16) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008242461.1 | 0.0 | PREDICTED: NAC domain-containing protein 82-like | ||||
Swissprot | Q9M0F8 | 0.0 | NAC75_ARATH; NAC domain-containing protein 75 | ||||
TrEMBL | A0A314YZC5 | 0.0 | A0A314YZC5_PRUYE; NAC domain-containing protein 82-like | ||||
STRING | XP_008242461.1 | 0.0 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4520 | 34 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29230.1 | 1e-145 | NAC domain containing protein 75 |
Publications ? help Back to Top | |||
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