PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008242370.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family C3H
Protein Properties Length: 899aa    MW: 99348.3 Da    PI: 5.2866
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008242370.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.19.8e-06514535426
                     ---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                     + Cr+f r G C+ Gd+CkF+H+
  XP_008242370.1 514 AYCRHFVR-GRCHEGDKCKFSHD 535
                     67******.*************7 PP
2zf-CCCH24.74.2e-08569589525
                     --SGGGGTS--TTTTT-SS-S CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                     +C++f ++G+C++GdrC F+H
  XP_008242370.1 569 PCNNFKENGFCSRGDRCMFSH 589
                     7******************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.084510537IPR000571Zinc finger, CCCH-type
SMARTSM003560.0051511536IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.67E-6511535IPR000571Zinc finger, CCCH-type
SMARTSM003563.5E-4539565IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.46539566IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.8E-4539564IPR000571Zinc finger, CCCH-type
SMARTSM003560.015567591IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-5568592IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-5569590IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.244569592IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-5569589IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 899 aa     Download sequence    Send to blast
MEEANIETGK PSQTLIAFPP HCRRHLKSGT YRTLVRILSH CYDESQHSAA DQNVPQELNQ  60
DNGSIEPVQA TEKEELENVE LVGPGSMEPK NSAAEEVGVA DESCNPNDFQ EQLEQIKSIL  120
NVEENEDFSK LNEVMDIENS LAIDFQDLDF DPEQILMDEP ERMEKGNEDD THRPSATSLD  180
QNQSGSDKVA LLTNQEEHDA TVISERLDVE PIMQQKAMEL ETYVSSEGAK ESFIPITEVG  240
AIKEPENFSQ KVPDSFDFSL NKDMVAEASK PAEYSKDKSS SRENNDLEVE HEMQQKDKEL  300
EEIVCTRTAI NSPSHMSEDI EEGEISSDDG MDDRSNDVLL HDTVVLEEKK VPELQIFKDV  360
LDRKEHSCKV ANDKDFGSNS FLVDMVDEGK IDRGAELRES SRTEMICRPG VVEGKNVKAL  420
KVDDANPLLE GGRIEMQDNG VRMGIGCPAA GNHGITSEEK WDDGACNKRK RGPPTKEKKE  480
KKKAKERKKR AEKNRELGVK RLKLHPIQKA KTVAYCRHFV RGRCHEGDKC KFSHDTVPLT  540
KSKPCVHFAR QSCMKGDDCQ YDHELSKYPC NNFKENGFCS RGDRCMFSHK MPSNEDSATA  600
ACKPELKPPM VLNNSRSQHV NTGGASQQNV HALANSTGIH SHNNTKQNVT QTVLKQPEPA  660
NKGISFPPIP KSSLVHFSMS KQEGLAPDRN NGAKAGNQID QSPLSSVQTS TEIVKRIPPV  720
TTPKGINFLS FGKASPDDAR GNNQVSRQTS PSLSETVKNL NGMLKANQSA APQGTHFNPF  780
GKSSVASSSS EKPVSLPSFW NNGSNIDSCE SQTTADKPQN SSGISLRLPP SPLTSGQSSD  840
LIASRFCKDT ANSFQRGLFS TLAFAAKYKT QNMNQSIGST GAQVDKETRN SSISDRFAE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1468489RKRGPPTKEKKEKKKAKERKKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008242370.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008242370.10.0PREDICTED: uncharacterized protein LOC103340702 isoform X1
TrEMBLA0A251NEK10.0A0A251NEK1_PRUPE; Uncharacterized protein
STRINGXP_008242370.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66502323