PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008242348.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family C3H
Protein Properties Length: 607aa    MW: 67093.5 Da    PI: 7.1884
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008242348.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.71.5e-06314336426
                     ---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                     +lC  f  +G C++G++C+F H+
  XP_008242348.1 314 RLCFKFVSSGSCPRGENCNFQHD 336
                     566667778*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd073802.14E-467233No hitNo description
PROSITE profilePS5010313.723310338IPR000571Zinc finger, CCCH-type
SMARTSM003560.0034312337IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.6E-6314338IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-4314336IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.16E-6314339IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.507342370IPR000571Zinc finger, CCCH-type
SMARTSM003563.0E-4344369IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.9E-4347369IPR000571Zinc finger, CCCH-type
PfamPF046773.9E-39386501IPR006768Cwf19-like, C-terminal domain-1
SuperFamilySSF541974.04E-8390466IPR011146HIT-like domain
Gene3DG3DSA:3.30.428.105.6E-6393508IPR011146HIT-like domain
PfamPF046761.1E-16522604IPR006767Cwf19-like protein, C-terminal domain-2
Gene3DG3DSA:3.30.428.105.6E-6578593IPR011146HIT-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005829Cellular Componentcytosol
GO:0003824Molecular Functioncatalytic activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 607 aa     Download sequence    Send to blast
MAPPKILLCG DVLGHLKQLF KRVASVNKSA GPFDALFCVG QFFPDSADQL DEFNDYIEGR  60
AQIPLPTYFI GDYGVAATKV LLAATKDSGN QGFKLDGLKI CNNLYWLKGS GKFKLHGLSV  120
AYLSGLQCSD GQQFGTYSQD DVDVLRAVAE EPGIIDLFLT NKWPSGITNR AAASDVPPGA  180
SEPFGSDSTV AELVAEIKPR YHIAGTKGVY YAREPYSNVD AVHVTRFLGL APVGNKDKQK  240
FIHAISPTPA STMSTVEIST KSPTTTLSPY TYGEKTDHAT EAGKRSSDSI SDSQYWRYDV  300
NQKRQKHGAG DGNRLCFKFV SSGSCPRGEN CNFQHDVDAR EQSLRGVCFD FMNKGKCERG  360
PDCKFKHSLQ AEGESNSHQR RGSGNANSNR STECWFCLSS PKVESHLIIS IGEHYYCALA  420
KGPLVEDHVL LIPIGHLPNT LSLPAECEIE LGKFQDALKQ YYKKQGKDVV FFEWASKRTT  480
HANLQAVPVP SAKSAAVQNI FNLAAEKLSF KFETMKSGNN SDGRKMLRTQ FDRNFSFFYV  540
QLPDGTILSH SIEENERFLP QFGREVIAGL LNKADRADWR NCTDSKEEEA KMAGDFKSGF  600
EEFDPNK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6id0_U9e-12394604675887CWF19-like protein 2
6id1_U9e-12394604675887CWF19-like protein 2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008242348.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008242348.10.0PREDICTED: zinc finger CCCH domain-containing protein 64
SwissprotQ84WU90.0C3H64_ARATH; Zinc finger CCCH domain-containing protein 64
TrEMBLM5VXH40.0M5VXH4_PRUPE; Uncharacterized protein
STRINGXP_008242348.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71321923