PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008242218.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family GRF
Protein Properties Length: 377aa    MW: 42672.1 Da    PI: 8.4804
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008242218.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC76.62.5e-2475118144
             WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                     d+epgrCrRtDGKkWRCs+++ +++k+CErH+hrg++rsrk++e
  XP_008242218.1  75 DPEPGRCRRTDGKKWRCSKEAFADSKYCERHMHRGKNRSRKPVE 118
                     79***************************************987 PP
2QLQ57.83.2e-20843237
             QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
                    +FT++Q+q+L++Q+l+yKy++++  +Pp+Ll+ i++
  XP_008242218.1  8 PFTPSQWQELEHQALIYKYMVSGISIPPDLLFSIKR 43
                    8*******************************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009513.1E-12743IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166622.446843IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088801.0E-14841IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.48975119IPR014977WRC domain
PfamPF088791.3E-2076118IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MSGRTRFPFT PSQWQELEHQ ALIYKYMVSG ISIPPDLLFS IKRSCLDSPL PSKLFSHPPH  60
IGWSCFQMGL GRKVDPEPGR CRRTDGKKWR CSKEAFADSK YCERHMHRGK NRSRKPVEVF  120
KTPITTNSNP SSPTPTTISS ITSKNNPPST STPTFHSLSS SLSSLSSESH HTQLNHSSYN  180
TNLDHHPFLY HHTSSSRPPG FGLSHQERNT SLLLDSGSYP QASSEYRNRY VYGLKEEVDE  240
HAFFSEPSGS VRDFSGSSSM DDSWQFTPLT MSTCTSSSSK QRSCSALQSE HSHLQLQSNI  300
TPKQQNYYAL GSDMKMDRNE GTQKTIHRFF DEWPLKDKDS WLDLDDKSSN SGSVSNTRLS  360
ISTHDFPVFS SRNHNDD
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008242218.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150421e-48AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
GenBankLN6818061e-48LN681806.1 Cucumis melo genomic scaffold, anchoredscaffold00025.
GenBankLN7132561e-48LN713256.1 Cucumis melo genomic chromosome, chr_2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008242218.10.0PREDICTED: growth-regulating factor 1 isoform X2
TrEMBLA0A251NH050.0A0A251NH05_PRUPE; Uncharacterized protein
STRINGXP_008242216.10.0(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.11e-55growth-regulating factor 5