PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_008241933.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

WOX

Protein Properties

Length: 273aa MW: 31202.8 Da PI: 5.6625

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_008241933.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	69.2	5e-22	91	151	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql++Le+lFe+ n +ps+++++e++++l +++e++V++WFqNrRa+ k+ XP_008241933.1 91 RQRWTPTPVQLQILERLFEQgNGTPSKQKIKEITSELsqhgQISETNVYNWFQNRRARSKR 151 89***************99************************************97 PP
2	Wus_type_Homeobox	101.6	5.5e-33	90	153	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ar+RWtPtp Q++iLe+l+++G tP+k++i++it+eL+++G+i+++NV++WFQNr+aR+++kq XP_008241933.1 90 ARQRWTPTPVQLQILERLFEQGNGTPSKQKIKEITSELSQHGQISETNVYNWFQNRRARSKRKQ 153 789***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.7E-18	86	156	IPR009057	Homeodomain-like
PROSITE profile	PS50071	15.37	87	152	IPR001356	Homeobox domain
SMART	SM00389	5.8E-15	89	156	IPR001356	Homeobox domain
SuperFamily	SSF46689	3.12E-19	90	156	IPR009057	Homeodomain-like
Pfam	PF00046	8.1E-20	91	151	IPR001356	Homeobox domain
CDD	cd00086	3.80E-13	91	153	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 273 aa Download sequence Send to blast
MMEWEKLQQK EHEMDGQANG NGNGGVLYVK VMTDEQLETL RKQIAVYASI CEQLVEMHKN 60 LTAQQDLAGV RMGNLYCDPL MTSAGHKITA RQRWTPTPVQ LQILERLFEQ GNGTPSKQKI 120 KEITSELSQH GQISETNVYN WFQNRRARSK RKQQNAACNH AESEVETEVD SPKDKKTRPE 180 ELFQSQQNSA QRTEDLCFQS PEISSDLHFL DPQTTKTDKM FPSNSGLRTS RHLSEMSFYD 240 EVLSNSRNDL MTGKIEAGNY NLFQQAEDYG MTG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	144	152	RRARSKRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00617	PBM	Transfer from AT4G35550	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_008241933.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008241933.1	0.0	PREDICTED: WUSCHEL-related homeobox 13
Swissprot	O81788	2e-95	WOX13_ARATH; WUSCHEL-related homeobox 13
TrEMBL	A0A251NDA0	0.0	A0A251NDA0_PRUPE; Uncharacterized protein
STRING	XP_008241933.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1855	34	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	7e-98	WUSCHEL related homeobox 13

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Dolzblasz A, et al. Stem Cell Regulation by Arabidopsis WOX Genes. Mol Plant, 2016. 9(7): p. 1028-39 [PMID:27109605]