PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_008241887.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | ZF-HD | ||||||||
Protein Properties | Length: 261aa MW: 29250.2 Da PI: 9.0368 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 103 | 2e-32 | 116 | 172 | 2 | 59 |
ZF-HD_dimer 2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 +kvrY+eClkNhAas Ggh++DGCgEfmps gee ++alkCaAC+CHRnFHR+e e XP_008241887.1 116 QKVRYRECLKNHAASSGGHVLDGCGEFMPS-GEEDIPEALKCAACECHRNFHRKEIEG 172 689**************************9.88889******************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 4.0E-30 | 118 | 170 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 2.0E-20 | 119 | 177 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 1.3E-30 | 119 | 170 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 26.417 | 120 | 169 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 1.22E-11 | 206 | 258 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 3.1E-22 | 208 | 254 | IPR006455 | Homeodomain, ZF-HD class |
Gene3D | G3DSA:1.10.10.60 | 4.6E-21 | 208 | 259 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
MEVRGQDKVI GMPTTLGYNP PNRDSSSSKL SSSPALPSTA NNTIFINPLQ TLDPHPPPHH 60 HQPHQLNLSP HKSSRRDSEQ NPDPISSPIV VTPSATSIPG GSNFKAPPVQ PPPAPQKVRY 120 RECLKNHAAS SGGHVLDGCG EFMPSGEEDI PEALKCAACE CHRNFHRKEI EGDHLPNNYY 180 VVNHQKHTIS RRDSETRVLQ LPPPPPPQKE KMMEVAEKLG WKIQRHDEQE VQKLCSEVGI 240 KRQVFKVWMH NNKQAMKKKQ M |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 8e-17 | 208 | 255 | 28 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_008241887.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008241887.1 | 0.0 | PREDICTED: zinc-finger homeodomain protein 5-like | ||||
Swissprot | Q9ZPW7 | 5e-48 | ZHD6_ARATH; Zinc-finger homeodomain protein 6 | ||||
TrEMBL | A0A251NBY4 | 1e-115 | A0A251NBY4_PRUPE; Uncharacterized protein | ||||
STRING | XP_008241887.1 | 0.0 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF206 | 34 | 253 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50890.1 | 2e-39 | homeobox protein 28 |