PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008241865.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family B3
Protein Properties Length: 418aa    MW: 47422.6 Da    PI: 8.1326
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008241865.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B335.22.2e-11241081099
                     HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
              B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 
                     vl+++ l +p + ++++g     + t+ l+ +++ +W  +l  +k+ g+++l++GW++F++   L  g +++F+++g+ s f   v++f +
  XP_008241865.1  24 VLSKDVLKFPESVVTKYGDC--LGDTVFLKVPNNAVWPTEL--TKRNGQVWLQQGWSNFADFYSLAFGYVLLFSYEGNhSHF--QVRIFMR 108
                     5778889999999*999755..6679***************..9********************************998888..8888865 PP
2B338.71.8e-121582401299
                     HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
              B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 
                     + g l +p   + ++g   +   t  ++ ++g  W ++l  ++++++++l++GW +F+k+  L++g f+vF++ g+ s f   +++frk
  XP_008241865.1 158 QDGKLEIPIIAVHTYGDYMAD--TAYFNVPDGSIWPIEL--TRRDREIWLGRGWPQFAKSYSLEDGCFLVFSYAGKcSHF--QLRIFRK 240
                     456677888888777655433..8999************..********************************9966666..9999997 PP
3B358.99.1e-19319413598
                     -..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EE CS
              B3   5 ltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkldgr.sefelvv 94 
                     + ps+vl++  l++p +f+ +h  ++ e+   +tl+ ++ ++W+v++ ++ ++gr    +   GW+ Fv++n+L+egD +vF+l+++  + +l+v
  XP_008241865.1 319 MQPSYVLNH--LRIPSSFVMKHiPSDGEC--NVTLQISDKKTWSVRCLIDVYGGRlsaRLHHHGWQAFVRDNQLEEGDACVFELIEKaPKIKLRV 409
                     445555554..9*******9997444335..69999999********999999985544555***********************988******* PP

                     EEE- CS
              B3  95 kvfr 98 
                     ++fr
  XP_008241865.1 410 RIFR 413
                     **98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.9E-1715106IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.29215109IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.3E-1716107IPR015300DNA-binding pseudobarrel domain
CDDcd100173.30E-1418106No hitNo description
SMARTSM010192.4E-820109IPR003340B3 DNA binding domain
PfamPF023622.1E-924108IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.2E-16145241IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.2E-16145241IPR015300DNA-binding pseudobarrel domain
CDDcd100174.66E-12146239No hitNo description
PROSITE profilePS5086310.701147241IPR003340B3 DNA binding domain
SMARTSM010191.8E-8148241IPR003340B3 DNA binding domain
PfamPF023623.7E-10157241IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.2E-22306414IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.08E-20308413IPR015300DNA-binding pseudobarrel domain
CDDcd100176.47E-21313413No hitNo description
PROSITE profilePS5086311.702313415IPR003340B3 DNA binding domain
SMARTSM010193.9E-10315415IPR003340B3 DNA binding domain
PfamPF023622.5E-16319413IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MGSSSRHGKG LAFPVDSRSF FKIVLSKDVL KFPESVVTKY GDCLGDTVFL KVPNNAVWPT  60
ELTKRNGQVW LQQGWSNFAD FYSLAFGYVL LFSYEGNHSH FQVRIFMRSP LEIDYFGSSV  120
KEEDNLNGEM DYSNSPKSPA SLMNAPSFFK IVLGRTLQDG KLEIPIIAVH TYGDYMADTA  180
YFNVPDGSIW PIELTRRDRE IWLGRGWPQF AKSYSLEDGC FLVFSYAGKC SHFQLRIFRK  240
NTLEMEYNSS SDDTEGNSNA SGDQTEGEKR THGGDGGKTA SHKSSEVDLR TAKLESLKGR  300
PFAKASSFKY DNPFTVIRMQ PSYVLNHLRI PSSFVMKHIP SDGECNVTLQ ISDKKTWSVR  360
CLIDVYGGRL SARLHHHGWQ AFVRDNQLEE GDACVFELIE KAPKIKLRVR IFRDKDQV
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008241865.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008241865.10.0PREDICTED: B3 domain-containing transcription factor VRN1-like
TrEMBLA0A251NBE20.0A0A251NBE2_PRUPE; Uncharacterized protein
STRINGXP_008241865.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2306834
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-17B3 family protein