PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_008241795.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

DBB

Protein Properties

Length: 184aa MW: 20361.1 Da PI: 6.5825

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_008241795.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	23.5	1.2e-07	4	33	5	34
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeH 34 C+ +e+ ++ fC ++ lC+ C ++ H XP_008241795.1 4 LCDSCESAAAIVFCAADEAALCPACDEKVH 33 7**************************998 PP
2	zf-B_box	27.8	5.3e-09	52	91	2	37
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....H 37 e ++C+ +e+ ++ ++Ce +++ lC +C + H g H XP_008241795.1 52 EVPRCDICENAPAFFYCEIDGSSLCLQCDMVVHVGgkrtH 91 789***************************9996545555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50119	10.125	1	47	IPR000315	B-box-type zinc finger
SMART	SM00336	5.2E-7	1	47	IPR000315	B-box-type zinc finger
Pfam	PF00643	6.5E-6	3	42	IPR000315	B-box-type zinc finger
CDD	cd00021	1.30E-5	3	45	No hit	No description
SuperFamily	SSF57845	8.24E-5	48	87	No hit	No description
PROSITE profile	PS50119	8.916	51	96	IPR000315	B-box-type zinc finger
SMART	SM00336	7.5E-12	51	96	IPR000315	B-box-type zinc finger
Pfam	PF00643	5.1E-7	52	91	IPR000315	B-box-type zinc finger
CDD	cd00021	3.95E-7	54	84	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 184 aa Download sequence Send to blast
MRTLCDSCES AAAIVFCAAD EAALCPACDE KVHMCNKLAS RHVRVGLATP SEVPRCDICE 60 NAPAFFYCEI DGSSLCLQCD MVVHVGGKRT HGRYLVLRQR VEFPGDKPGN VDDPASQPID 120 PGETRRVQHQ PPRMTIGENQ QNHRASPIRI SDANADGHVK MDTKLIDLNM KPHRMHEQAS 180 NKED

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as negative regulator of seedling photomorphogenesis. {ECO:0000269\|PubMed:18540109}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_008241795.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008241795.1	1e-136	PREDICTED: B-box zinc finger protein 19-like
Swissprot	C0SVM5	2e-74	BBX19_ARATH; B-box zinc finger protein 19
TrEMBL	A0A251NCH5	1e-133	A0A251NCH5_PRUPE; Uncharacterized protein
STRING	XP_008241795.1	1e-135	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2734	33	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38960.1	7e-77	DBB family protein