PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_008241770.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

SRS

Protein Properties

Length: 378aa MW: 40894.9 Da PI: 6.873

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_008241770.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	227.8	1.9e-70	129	294	3	154
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaesk 97 g+asCqdCGnqakkdC h+RCRtCCksrgfdC thvkstWvpa+krrerqqql a+++++++++++++++++r++ ++q++l+ + ++++ XP_008241770.1 129 GGSASCQDCGNQAKKDCIHMRCRTCCKSRGFDCPTHVKSTWVPASKRRERQQQLMALQQQQQQQQQQQEHHQQRQQ--QQQQQLQVIRGENSKRL 221 5789***************************************************9999888777777777765..55555555555555555 PP DUF702 98 keletss................lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 +e + s+ +P+evss+avfrcvrvss++d+++++aYqtav+igGh+fkGiLydqG+e+ XP_008241770.1 222 RENPNSNsslrilgntsglelgnFPAEVSSPAVFRCVRVSSIEDDDDQYAYQTAVNIGGHLFKGILYDQGPET 294 44444445688899999****************************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	3.5E-68	131	293	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	6.0E-28	133	175	IPR006510	Zinc finger, lateral root primordium type 1
Gene3D	G3DSA:1.20.1000.10	2.6E-5	174	221	No hit	No description
TIGRFAMs	TIGR01624	1.7E-28	245	292	IPR006511	Lateral Root Primordium type 1, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009938	Biological Process	negative regulation of gibberellic acid mediated signaling pathway
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 378 aa Download sequence Send to blast
MAGFFSLGRG GNNNNNQDQD HHNSNNPPPP DHQIAPETLF WYKNEDVAAQ PYKGFELWQQ 60 QEQLLQLQTQ PPRLFHHHPH HHQDLYASAA ALGVGPSSRG SDDTSSSRSA AALMMMRSSS 120 GGGAGGSGGG SASCQDCGNQ AKKDCIHMRC RTCCKSRGFD CPTHVKSTWV PASKRRERQQ 180 QLMALQQQQQ QQQQQQEHHQ QRQQQQQQQL QVIRGENSKR LRENPNSNSS LRILGNTSGL 240 ELGNFPAEVS SPAVFRCVRV SSIEDDDDQY AYQTAVNIGG HLFKGILYDQ GPETSNYNMN 300 MAVAAAAAET SSGGGGVNIQ PLNLIAGAPP AANTATIGGG DDEGVAGAST TVIDPSSLYP 360 APLNTYMAGT QFFLPPRS

Sequence ? help Back to Top

Protein Sequence Length: 378 aa Download sequence Send to blast

MAGFFSLGRG GNNNNNQDQD HHNSNNPPPP DHQIAPETLF WYKNEDVAAQ PYKGFELWQQ  60
QEQLLQLQTQ PPRLFHHHPH HHQDLYASAA ALGVGPSSRG SDDTSSSRSA AALMMMRSSS  120
GGGAGGSGGG SASCQDCGNQ AKKDCIHMRC RTCCKSRGFD CPTHVKSTWV PASKRRERQQ  180
QLMALQQQQQ QQQQQQEHHQ QRQQQQQQQL QVIRGENSKR LRENPNSNSS LRILGNTSGL  240
ELGNFPAEVS SPAVFRCVRV SSIEDDDDQY AYQTAVNIGG HLFKGILYDQ GPETSNYNMN  300
MAVAAAAAET SSGGGGVNIQ PLNLIAGAPP AANTATIGGG DDEGVAGAST TVIDPSSLYP  360
APLNTYMAGT QFFLPPRS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Suppressor of the gibberellin (GA) signal transduction. {ECO:0000269\|PubMed:10368174, ECO:0000269\|PubMed:11706176, ECO:0000269\|PubMed:16740146}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_008241770.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008241770.1	0.0	PREDICTED: protein SHORT INTERNODES-like
Swissprot	Q9XGX0	4e-94	SHI_ARATH; Protein SHORT INTERNODES
TrEMBL	A0A251NCD8	0.0	A0A251NCD8_PRUPE; Uncharacterized protein
STRING	XP_008241770.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF882	34	125

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66350.1	9e-71	Lateral root primordium (LRP) protein-related

Publications ? help Back to Top
Islam MA, et al. Overexpression of the AtSHI gene in poinsettia, Euphorbia pulcherrima, results in compact plants. PLoS ONE, 2013. 8(1): p. e53377 [PMID:23308204] Pfannebecker KC,Lange M,Rupp O,Becker A An Evolutionary Framework for Carpel Developmental Control Genes. Mol. Biol. Evol., 2017. 34(2): p. 330-348 [PMID:28049761] Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]