PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_008241676.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 95aa MW: 10953.6 Da PI: 10.1861 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 25.5 | 3.1e-08 | 11 | 55 | 2 | 44 |
SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 ++WT+ +l+ +a + + + +W++Iar +g g t++++k + XP_008241676.1 11 LNWTAKQNKLFENALATYDEEtpdRWHKIARIVG-GTTEEEVKRQY 55 69*****************99*************.********877 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 2.1E-6 | 9 | 61 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.1E-5 | 12 | 55 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.33E-6 | 12 | 59 | No hit | No description |
PROSITE profile | PS50090 | 6.133 | 12 | 59 | IPR017877 | Myb-like domain |
SuperFamily | SSF46689 | 4.13E-11 | 12 | 67 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 95 aa Download sequence Send to blast |
MSKLSSPQPS LNWTAKQNKL FENALATYDE ETPDRWHKIA RIVGGTTEEE VKRQYEILLS 60 DIKRIESGKV PLPKYRKVGA SNISNEEKRL KILKL |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 2e-30 | 13 | 95 | 11 | 92 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_008241676.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_008241676.1 | 7e-64 | PREDICTED: protein RADIALIS-like 3 | ||||
Swissprot | F4JVB8 | 4e-32 | RADL1_ARATH; Protein RADIALIS-like 1 | ||||
TrEMBL | A0A314YXC1 | 3e-60 | A0A314YXC1_PRUYE; Protein RADIALIS-like 3 | ||||
STRING | XP_008241676.1 | 3e-63 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF154 | 34 | 280 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G39250.1 | 2e-34 | RAD-like 1 |
Publications ? help Back to Top | |||
---|---|---|---|
|