PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008241642.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family GRAS
Protein Properties Length: 561aa    MW: 62468.6 Da    PI: 6.3053
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008241642.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS298.81.4e-911845592374
            GRAS   2 velLlecAeavssgdlelaqalLarlsel......aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 
                     +e L+++A++++s++l+laq +L rl+++      + p g+p+qR+a yf  AL++ l++s s      + + +s+++ ++++ a+k+f  +sP+
  XP_008241642.1 184 IEELIRAADCFDSDELQLAQGILDRLNQRlrssspSKPVGKPLQRAAVYFRDALQSILNGSDSA----AHNQLSSWSEIVQTIRAYKVFCGISPV 274
                     679*************************9876433345679*******************4444....45555666669**************** PP

            GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp......eg.ppslRiTgvgspesgskeeleetgerLakfAeelgvpfef 178
                     + fsh+t+Nqa+le ++ +  +H++Dfdi+ G+Q+++L+++La+++      ++ p  lRiT+v+++e   + e++ ++e+L++fA+ l+++f+ 
  XP_008241642.1 275 PMFSHFTTNQALLEGLSCSAFIHVVDFDIGFGGQYASLMKELAEKAdvagrtSPvPQVLRITAVVPEE--YAGETRLVKENLSQFAQDLKIRFQV 367
                     ********************************************99776544344559********66..99999******************** PP

            GRAS 179 nvlvakrledleleeLrvkpgEalaVn..lvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe..adhnsesFlerflealeyysalfd 269
                     +++ ++++e++++++ ++  gE++a     vl   ++l ++++++++++++L  +++lsP vvv+v+ +   d  ++sF + f+++le++s++++
  XP_008241642.1 368 EFVPVRTFETMSFKAVKFMDGEKTAGLkpAVLLSPYIL-RRLCSQNNISAFLGDMRRLSPSVVVFVDADgmGDSATTSFRRNFVSSLEFFSVMLE 461
                     ***9*******************984311223333444.55566667999*******************54455788****************** PP

            GRAS 270 sleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkd 364
                     sl+a  ++ se ++k+E +ll+++i+ +v ++g++       +  Wre+++ aG+++v+ls++a  qa++ll kv+++g++v +++++lvl+W++
  XP_008241642.1 462 SLDAATAASSEVMKKIETFLLRPKIQAAVEAAGRR-------VPPWREAFRGAGMRAVELSQFADFQAQCLLGKVQVRGFHVAKRQAELVLCWHE 549
                     **9999***************************98.......99*************************************************** PP

            GRAS 365 rpLvsvSaWr 374
                     ++Lv++SaWr
  XP_008241642.1 550 KALVATSAWR 559
                     *********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098536.862157539IPR005202Transcription factor GRAS
PfamPF035144.8E-89184559IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0048831Biological Processregulation of shoot system development
Sequence ? help Back to Top
Protein Sequence    Length: 561 aa     Download sequence    Send to blast
MRVPVSSPQT NPKLESCNNN TNTNTNQTNR GLNFPANLNI QNLCYEPTSV LDLCHSPSPV  60
AEQKPAKISA VSDVLSHSNH HDPLEWDEQA LHNLDWDSIM RDLGLHDDSV PNLKTSIPQL  120
NSTDSQISHL SDYPHPQPFD PTQLVHSDFN INLSEVYSTQ NFTNATHNFY DHQPGNWNVG  180
FDFIEELIRA ADCFDSDELQ LAQGILDRLN QRLRSSSPSK PVGKPLQRAA VYFRDALQSI  240
LNGSDSAAHN QLSSWSEIVQ TIRAYKVFCG ISPVPMFSHF TTNQALLEGL SCSAFIHVVD  300
FDIGFGGQYA SLMKELAEKA DVAGRTSPVP QVLRITAVVP EEYAGETRLV KENLSQFAQD  360
LKIRFQVEFV PVRTFETMSF KAVKFMDGEK TAGLKPAVLL SPYILRRLCS QNNISAFLGD  420
MRRLSPSVVV FVDADGMGDS ATTSFRRNFV SSLEFFSVML ESLDAATAAS SEVMKKIETF  480
LLRPKIQAAV EAAGRRVPPW REAFRGAGMR AVELSQFADF QAQCLLGKVQ VRGFHVAKRQ  540
AELVLCWHEK ALVATSAWRC N
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A1e-2818955824377Protein SCARECROW
5b3h_D1e-2818955824377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008241642.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008241642.10.0PREDICTED: scarecrow-like protein 15
SwissprotO232101e-164SCL15_ARATH; Scarecrow-like protein 15
TrEMBLM5VV560.0M5VV56_PRUPE; Uncharacterized protein
STRINGXP_008241642.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59593252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36710.11e-166GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]