PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008241637.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family HD-ZIP
Protein Properties Length: 214aa    MW: 24764.8 Da    PI: 6.9798
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008241637.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.31.5e-1958112357
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
        Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                     k++++t+eq++ Le  F +++++  e++ +LA++lgL+ rqV vWFqNrRa++k+
  XP_008241637.1  58 KKRKLTAEQVNLLELNFGNEHKLESEKKDRLASELGLDPRQVAVWFQNRRARWKN 112
                     56699************************************************95 PP
2HD-ZIP_I/II119.12.4e-3858149293
     HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                     kkr+l++eqv+lLE +F +e+kLe+e+K +la+eLgl+prqvavWFqnrRAR+k+k+lE++y+ Lk+++d+ ++en++Le+e+++L+e+l+e
  XP_008241637.1  58 KKRKLTAEQVNLLELNFGNEHKLESEKKDRLASELGLDPRQVAVWFQNRRARWKNKKLEEEYSNLKKEHDNTVSENRKLESEMSKLKEQLSE 149
                     9****************************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.55253113IPR001356Homeobox domain
SMARTSM003891.3E-1756117IPR001356Homeobox domain
SuperFamilySSF466895.13E-1857122IPR009057Homeodomain-like
PfamPF000469.6E-1758112IPR001356Homeobox domain
CDDcd000862.46E-1558114No hitNo description
Gene3DG3DSA:1.10.10.601.0E-2060120IPR009057Homeodomain-like
PRINTSPR000311.8E-58493IPR000047Helix-turn-helix motif
PROSITE patternPS00027088111IPR017970Homeobox, conserved site
PRINTSPR000311.8E-593109IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MTTKTNHQVV EEDDHMLLIS HLYPSDVYTQ IVPQQGASKP KRRRKKSKSG EAGGAGHKKR  60
KLTAEQVNLL ELNFGNEHKL ESEKKDRLAS ELGLDPRQVA VWFQNRRARW KNKKLEEEYS  120
NLKKEHDNTV SENRKLESEM SKLKEQLSEA EKEIQRLSVR VDHGGSSNSP SSSLSMDAID  180
PPFLGEFGVE EYDDVFYMPQ NNYIHGMEWM NLYM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14159RRRKKSKSGEAGGAGHKKR
24360RKKSKSGEAGGAGHKKRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00473DAPTransfer from AT4G36740Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008241637.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008241637.11e-159PREDICTED: homeobox-leucine zipper protein ATHB-40
SwissprotO232081e-76ATB40_ARATH; Homeobox-leucine zipper protein ATHB-40
TrEMBLM5WGL91e-134M5WGL9_PRUPE; Uncharacterized protein
STRINGXP_008241637.11e-158(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47893257
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36740.15e-67homeobox protein 40
Publications ? help Back to Top
  1. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]