PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008241541.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family G2-like
Protein Properties Length: 392aa    MW: 43916.2 Da    PI: 6.2039
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008241541.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like100.61e-31251306156
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                     k+r++W+peLH+rF+e ++qLGG+++AtPk+i+elm+v+gLt+++vkSHLQkYRl+
  XP_008241541.1 251 KQRRCWSPELHRRFIESLQQLGGTQVATPKQIRELMQVDGLTNDEVKSHLQKYRLH 306
                     79****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.98248308IPR017930Myb domain
SuperFamilySSF466892.33E-17249309IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.9E-28250309IPR009057Homeodomain-like
TIGRFAMsTIGR015574.3E-26251306IPR006447Myb domain, plants
PfamPF002493.1E-7253304IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010092Biological Processspecification of organ identity
GO:0010629Biological Processnegative regulation of gene expression
GO:0048449Biological Processfloral organ formation
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MELSLDTSLV FIPKTISDFL AQLSTMEDSS QRSSELDAYV KRLEDEMRKI EVFKRELPLC  60
MLLLKDAIER LKERVMQCKK MEDRPVIEEF IPLKGNLDEN GGGVLGKENS DKKNWMSSAQ  120
LWSTSLNIFE YSKHDPESGL RMRNEEDDRS VPENSIEPSN NRAMGRTFVP FKEQYESGFT  180
GTCLKDDKEV SQVPSLSLMT PLMSEALDAS TNTNIKSNNN CRGGSGSGLA GQLKLQNKPQ  240
QQSQQQQPFR KQRRCWSPEL HRRFIESLQQ LGGTQVATPK QIRELMQVDG LTNDEVKSHL  300
QKYRLHVRKL PASSAAKGNG IWMPLDHSAD HSKANNSQSG SPQGPLLPGE FAKGRSTTGG  360
ESDNSREAEE DEKSDGQSWK GGLLHNNQGG DV
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00629PBMTransfer from PK14402.1Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008241541.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008241541.10.0PREDICTED: uncharacterized protein LOC103339953
TrEMBLM5WFN30.0M5WFN3_PRUPE; Uncharacterized protein
STRINGXP_008241541.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF120834107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37180.16e-56G2-like family protein