PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_008241428.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | ERF | ||||||||
Protein Properties | Length: 200aa MW: 22350.1 Da PI: 4.6724 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 45.5 | 1.8e-14 | 43 | 93 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkklege 56 ykGVr+ + g+Wv+e+r p k+ r++lg+f +++Aa+a++ a+++l+ge XP_008241428.1 43 IYKGVRQ--RCGKWVCELRQP---DqKKSRIWLGTFTCPDMAARAYDVAALALKGE 93 69***86..47******9998...3357*************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 3.19E-26 | 42 | 101 | No hit | No description |
Pfam | PF00847 | 7.4E-10 | 42 | 93 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.03E-17 | 43 | 102 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 19.348 | 43 | 100 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.1E-26 | 43 | 102 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.1E-27 | 43 | 106 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-6 | 44 | 55 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-6 | 82 | 102 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 200 aa Download sequence Send to blast |
MTDFTDDASS SSNRVSAQAH LQSVEFKKRK AGRKKFNETR HPIYKGVRQR CGKWVCELRQ 60 PDQKKSRIWL GTFTCPDMAA RAYDVAALAL KGESAALNFP HEASTLPRIT STCSVKDLQC 120 AAAAAAEGFF EVEVKASGLE EKQEEEVVYL DEEELFNMPG LIDSLAEGLI LTPPAMQKGF 180 NWNDFDDDME NAVDFSLWSD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-15 | 41 | 102 | 12 | 74 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}. | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. {ECO:0000269|PubMed:17136305}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_008241428.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By calcium ion, methyl-jasmonate (MeJA), cold, drought, and high salinity stress. {ECO:0000269|PubMed:17136305}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008241428.1 | 1e-149 | PREDICTED: dehydration-responsive element-binding protein 1F | ||||
Swissprot | A2WZI4 | 3e-49 | DRE1F_ORYSI; Dehydration-responsive element-binding protein 1F | ||||
Swissprot | Q8S9Z5 | 3e-49 | DRE1F_ORYSJ; Dehydration-responsive element-binding protein 1F | ||||
TrEMBL | M5W9P6 | 1e-130 | M5W9P6_PRUPE; Uncharacterized protein | ||||
STRING | XP_008241428.1 | 1e-148 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF243 | 33 | 224 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25490.1 | 1e-32 | C-repeat/DRE binding factor 1 |
Publications ? help Back to Top | |||
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