PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008241330.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family HD-ZIP
Protein Properties Length: 225aa    MW: 26163.4 Da    PI: 8.4172
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008241330.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.82.2e-1966119356
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     k+ +++++qle Le+ F+++ +++ +++ +L+++lgL+ rq+ vWFqNrRa++k
  XP_008241330.1  66 KKKRLSTDQLESLERSFQEEIKLDPDRKMKLSRELGLQPRQIAVWFQNRRARWK 119
                     55679************************************************9 PP
2HD-ZIP_I/II119.22.2e-3866155291
     HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                     kk+rls++q+++LE+sF+ee kL+p+rK++l+reLglqprq+avWFqnrRAR+k+kqlE+ y+aLk++yd +++e+++L++ev +L++ l
  XP_008241330.1  66 KKKRLSTDQLESLERSFQEEIKLDPDRKMKLSRELGLQPRQIAVWFQNRRARWKAKQLERLYDALKQEYDVVSKEKQKLQEEVMKLKTIL 155
                     9*************************************************************************************9766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.29E-1953123IPR009057Homeodomain-like
PROSITE profilePS5007116.98961121IPR001356Homeobox domain
SMARTSM003898.0E-1763125IPR001356Homeobox domain
PfamPF000461.4E-1666119IPR001356Homeobox domain
CDDcd000861.41E-1566122No hitNo description
Gene3DG3DSA:1.10.10.603.1E-2068128IPR009057Homeodomain-like
PRINTSPR000313.9E-592101IPR000047Helix-turn-helix motif
PROSITE patternPS00027096119IPR017970Homeobox, conserved site
PRINTSPR000313.9E-5101117IPR000047Helix-turn-helix motif
PfamPF021838.2E-8121155IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0010434Biological Processbract formation
GO:0010582Biological Processfloral meristem determinacy
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MDWNSNLRHL VSRPEPSFGF LYNYNYDCYP PGMEMKHQAV MSESSQGLVP GLDRNHSSYG  60
CSGQDKKKRL STDQLESLER SFQEEIKLDP DRKMKLSREL GLQPRQIAVW FQNRRARWKA  120
KQLERLYDAL KQEYDVVSKE KQKLQEEVMK LKTILRDEVA RKQVSTGYTE ISGEETVEST  180
SVAIRSSNKG GRTSQHQVQE CNYLFNVEEY NPVSPPFWGA LPSYP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1113121RRARWKAKQ
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00486DAPTransfer from AT5G03790Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008241330.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008241330.11e-169PREDICTED: putative homeobox-leucine zipper protein ATHB-51
SwissprotQ9LZR03e-55ATB51_ARATH; Putative homeobox-leucine zipper protein ATHB-51
TrEMBLA0A498ICZ71e-138A0A498ICZ7_MALDO; Uncharacterized protein
STRINGXP_008241330.11e-168(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33943466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03790.11e-57homeobox 51
Publications ? help Back to Top
  1. Andres RJ, et al.
    Modifications to a LATE MERISTEM IDENTITY1 gene are responsible for the major leaf shapes of Upland cotton (Gossypium hirsutum L.).
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(1): p. E57-E66
    [PMID:27999177]
  2. Vuolo F, et al.
    LMI1 homeodomain protein regulates organ proportions by spatial modulation of endoreduplication.
    Genes Dev., 2018. 32(21-22): p. 1361-1366
    [PMID:30366902]