PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008241325.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family Trihelix
Protein Properties Length: 526aa    MW: 56845.6 Da    PI: 6.6976
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008241325.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix57.92.6e-18147233186
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergf.er.spkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     +W+++ + +L++a++++ ++l+rg+l++ +Weev++ ++er   +r s  qCk+k +nl+kryk ++++++++   s s++p+f+++e
  XP_008241325.1 147 EWSDSAISCLLDAYTDKFTQLNRGNLRGRDWEEVAAIVSERCDrQReSVDQCKNKVDNLKKRYKLERQRMNNG-GVSASHWPWFKKME 233
                     5*************************************665432555999*******************9998.566679*******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.0E-20145235No hitNo description
Gene3DG3DSA:3.40.1160.106.3E-73275519IPR001048Aspartate/glutamate/uridylate kinase
HamapMF_01220_B33.961285520IPR015963Uridylate kinase, bacteria
SuperFamilySSF536339.03E-58285519IPR001048Aspartate/glutamate/uridylate kinase
CDDcd042546.76E-124288520No hitNo description
PfamPF006961.5E-25289499IPR001048Aspartate/glutamate/uridylate kinase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006221Biological Processpyrimidine nucleotide biosynthetic process
GO:0005737Cellular Componentcytoplasm
GO:0033862Molecular FunctionUMP kinase activity
Sequence ? help Back to Top
Protein Sequence    Length: 526 aa     Download sequence    Send to blast
MASCDDDFSI LGDESNTTHH SHLPHAPASH QLHQPYAPPH RFATRTTPVH APPAQPILSD  60
KVNAGEDQAE AGDDYDDASA AAFCSNPFES GTDQNDVVAG ASEKRKGHSD ELSDGGGGGS  120
GSAPYSYKRS KPSSAAAIGE YRKDREEWSD SAISCLLDAY TDKFTQLNRG NLRGRDWEEV  180
AAIVSERCDR QRESVDQCKN KVDNLKKRYK LERQRMNNGG VSASHWPWFK KMENIVGNSL  240
PGKAVSDEDK GVSSPGTTPR QSKRNAMAII SPVSQMNKVK SALSIKWRRV VFKISGAALA  300
GAAPNNVDSK LAMLIAREVA LACHNGVEVA IVVGGRNFFC GDAWVTATGL DRSTAYQIGM  360
MATVMNSVLL QSALEKMGVQ TRVQTAFSMQ EVAEPYSRQR AIRHLEKGRV VIFAGIGAGT  420
GNPLFSTDTA AALRALEIQA EAVLKGTNVD GVYDCNSQDN NFTFEHISFR DVVTRGATSM  480
DSMALTFCEE NRIPVVVFNL LEPGNISKAL CGEQVGTLID QAGRIS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ek5_A1e-612855197239Uridylate kinase
3ek5_B1e-612855197239Uridylate kinase
3ek5_C1e-612855197239Uridylate kinase
3ek5_D1e-612855197239Uridylate kinase
3ek5_E1e-612855197239Uridylate kinase
3ek5_F1e-612855197239Uridylate kinase
3ek6_A1e-612855197239Uridylate kinase
3ek6_B1e-612855197239Uridylate kinase
3ek6_C1e-612855197239Uridylate kinase
3ek6_D1e-612855197239Uridylate kinase
3ek6_E1e-612855197239Uridylate kinase
3ek6_F1e-612855197239Uridylate kinase
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00340DAPTransfer from AT3G10030Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008241325.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008241325.10.0PREDICTED: uncharacterized protein LOC103339757 isoform X2
TrEMBLM5WDK00.0M5WDK0_PRUPE; Uncharacterized protein
STRINGEMJ048400.0(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.10.0Trihelix family protein