PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008241139.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family E2F/DP
Protein Properties Length: 292aa    MW: 32746 Da    PI: 7.1657
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008241139.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP57.32.5e-1868148371
         E2F_TDP   3 eksLrlltqkflklleksee.givtlnevakeLvse...............dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                     + +Lr+++     ++   e+ g++t+ e a+ ++se               + kn+ RR+YD+lNVLeal++i++  k+ei+w+g
  XP_008241139.1  68 GGGLRQFSAI---VCDLLESkGRTTYAELADYIMSElagndsetatslsefNDKNIPRRVYDALNVLEALDIITR-VKKEIKWNG 148
                     579*******...77776666******************************999*********************.9******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.6E-2964153IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013724.4E-1966148IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467856.8E-1669149IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023192.1E-1769148IPR003316E2F/DP family, winged-helix DNA-binding domain
CDDcd144589.45E-36152255IPR014889Transcription factor DP, C-terminal
SMARTSM011384.8E-34154290IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440746.02E-34155277No hitNo description
PfamPF087811.5E-27156265IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MDDNYSGDSF GGFFQKHSSA ESSVSASLKH AAAFGSARRS ITFDHDDTGT ANVETNAPKK  60
KRVSRMTGGG LRQFSAIVCD LLESKGRTTY AELADYIMSE LAGNDSETAT SLSEFNDKNI  120
PRRVYDALNV LEALDIITRV KKEIKWNGIP DRKMDLEGMK AECVKMMNRI GRKTAYLKDL  180
EEQFADLQNL MCCNKELLKS GNTRPGGFSL PFILVQTSRD AAVEIEISED KHMVHFDFNS  240
APFFLHDDTY ILKLLRRHQP PERTNVSQNY SVYPPSPCPS IGTLEQKLRT PK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B1e-2168150990PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008241139.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008241139.10.0PREDICTED: transcription factor-like protein DPB
SwissprotQ9FNY23e-71DPB_ARATH; Transcription factor-like protein DPB
TrEMBLM5W7W90.0M5W7W9_PRUPE; Uncharacterized protein
STRINGXP_008241139.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33213366
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.13e-73Transcription factor DP