PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008241127.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family Dof
Protein Properties Length: 380aa    MW: 40036 Da    PI: 9.4424
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008241127.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof124.43.8e-3983142362
          zf-Dof   3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                     e alkcprCdstntkfCy+nnyslsqPr+fCk+CrryWt+GGalrnvPvGgg+r+nk+s+
  XP_008241127.1  83 EPALKCPRCDSTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRSK 142
                     6789*****************************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-3470140IPR003851Zinc finger, Dof-type
PfamPF027011.0E-3285140IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.73986140IPR003851Zinc finger, Dof-type
PROSITE patternPS01361088124IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MVFSSIPAYL DPSNWQQQPN HHHLTGSTSN NSNINNNNNS HLLPPPPPPS NPHGGGSGAG  60
GVGSIRPGSM ADRARMANIP LPEPALKCPR CDSTNTKFCY FNNYSLSQPR HFCKTCRRYW  120
TRGGALRNVP VGGGCRRNKR SKGSSSAASK SPVSSSDRPT GSPGSSGQAN IGLNNTASTA  180
DNNIMMSPQI PPLRFMSPFA TDMALNYGMN VNNYGGGGGV GDMNSFHQMG SSIGSIGGSL  240
FNFQQQTPSF PFLTAGGGLD PSQAAAGMMF ENSGVEVTGY NQVRPRAPSG HGVVGMNSQM  300
AAVKMELESQ QHHQNQNQNQ SQNQELNLSR QLMGMSSGND QYWGNGSGAG GGGTSNTSWT  360
DLSGFSSTTS TPSNNINNPL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00295DAPTransfer from AT2G37590Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008241127.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008241127.10.0PREDICTED: dof zinc finger protein DOF2.4
TrEMBLA0A314YPU71e-180A0A314YPU7_PRUYE; Dof zinc finger protein DOF2.4
STRINGXP_008241127.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65634143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37590.15e-48DNA binding with one finger 2.4