PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008240953.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family SBP
Protein Properties Length: 381aa    MW: 41471.7 Da    PI: 9.94
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008240953.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP137.92.9e-4379156178
                     --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
             SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                     +CqvegC++dls+ak y++rhkvC  hsk+p+v+v+gleqrfCqqCsrfh+l efD++krsCrrrLa+hnerrrk+q+
  XP_008240953.1  79 RCQVEGCQVDLSDAKAYYSRHKVCGLHSKTPKVIVAGLEQRFCQQCSRFHQLPEFDQGKRSCRRRLAGHNERRRKPQP 156
                     6**************************************************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.104.4E-3574141IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.40277154IPR004333Transcription factor, SBP-box
SuperFamilySSF1036129.42E-4178158IPR004333Transcription factor, SBP-box
PfamPF031102.0E-3280153IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0048653Biological Processanther development
GO:2000025Biological Processregulation of leaf formation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MEMSSSSMTE SGSSSSSSPP NSSTESLNGL KFGQKIYFED TSLGASYKSG SAGSSSSSGA  60
TPPKKQRAGH LAHPGQPPRC QVEGCQVDLS DAKAYYSRHK VCGLHSKTPK VIVAGLEQRF  120
CQQCSRFHQL PEFDQGKRSC RRRLAGHNER RRKPQPGSVS TRFGQLSSSL FENSNRVGSF  180
LMDFTAYPRP ADRDAWATTR TSERVPVNQN ANGTGKFLQH PWQSNSVTTS GRYLQGSAXX  240
XXXPGIPPRE CVTGVADSSC ALSLLSNQPW GSRNRPSGVG MNAYLNTWMN TQGVAVTQPM  300
AHAGTSNHFP TTSLGFKGNE AGSSSHEMLP DLGLGQISQP LSRQYSGVLE LSQQNRRQQH  360
MELGHTRGYD SSTNQQMHWS L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A3e-31801531184squamosa promoter binding protein-like 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00307DAPTransfer from AT2G42200Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008240953.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008240953.10.0PREDICTED: LOW QUALITY PROTEIN: squamosa promoter-binding-like protein 9
TrEMBLM5WCY20.0M5WCY2_PRUPE; Uncharacterized protein
STRINGXP_008240953.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42083359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42200.12e-65squamosa promoter binding protein-like 9