PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008240946.2
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family G2-like
Protein Properties Length: 419aa    MW: 47178.8 Da    PI: 7.8911
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008240946.2genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like96.91.5e-30244298155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     k+r+rW+++LHe+Fve+v++LGG++kAtPk+il++m ++gLt+ hvkSHLQkYR+
  XP_008240946.2 244 KTRIRWNQDLHEKFVECVNRLGGADKATPKAILKMMCLDGLTIFHVKSHLQKYRI 298
                     68****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.33E-16242298IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.5E-26243299IPR009057Homeodomain-like
TIGRFAMsTIGR015574.5E-22244299IPR006447Myb domain, plants
PfamPF002499.1E-8248297IPR001005SANT/Myb domain
PfamPF143792.1E-20329375IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MNAQKIDCQE RIIQQSHGLI SDFNFELGSQ SSQNFDLQQA WNMGIWVQQR TXXXNMSQLQ  60
NHGLPRSPSS IMSRFESPAS AFYATERCMG FSQYHSQVGN SQFPSGQTYN ESYGSMDSSE  120
QADPNLDIRN TLQSIVKSQP SSYHQYQKSS EKPNQIPLPS NNHFEHQQNK LRGESTASVR  180
RPSLSLPPKE NQDQAGGCNS FSTSPVTQLS FFPQQGKQSP SISSGNVSTT YGDSPSTSPV  240
LTSKTRIRWN QDLHEKFVEC VNRLGGADKA TPKAILKMMC LDGLTIFHVK SHLQKYRIAK  300
YLPDTAEGKS EKRTTLNVEP QLDMKTGLQI KEALQLQLDV QRRLHEQLEI QRNLQLRIEE  360
QGKQLKKMFD LQQKTSNDLF KTQNLDIACH EDAPSDSLNA IQVSSPEDSG NSNFPSKIS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A6e-22244301259Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B6e-22244301259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A6e-22244301259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C6e-22244301259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D6e-22244301259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F6e-22244301259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H6e-22244301259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J6e-22244301259Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008240946.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008240946.20.0PREDICTED: probable transcription factor KAN3 isoform X2
SwissprotQ0WVU34e-72PHL5_ARATH; Myb family transcription factor PHL5
TrEMBLA0A251NA940.0A0A251NA94_PRUPE; Uncharacterized protein
STRINGXP_008240945.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37403465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06800.12e-74G2-like family protein