PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008240945.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family G2-like
Protein Properties Length: 360aa    MW: 40292.9 Da    PI: 8.2134
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008240945.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like97.21.2e-30173227155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     k+r+rW+++LHe+Fve+v++LGG++kAtPk+il++m ++gLt+ hvkSHLQkYR+
  XP_008240945.1 173 KTRIRWNQDLHEKFVECVNRLGGADKATPKAILKMMCLDGLTIFHVKSHLQKYRI 227
                     68****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.79E-16171227IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-26172228IPR009057Homeodomain-like
TIGRFAMsTIGR015573.6E-22173228IPR006447Myb domain, plants
PfamPF002497.3E-8177226IPR001005SANT/Myb domain
PfamPF143791.7E-20270316IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MSRFESPASA FYATERCMGF SQYHSQVGNS QFPSGQTYNE SYGSMDSSEQ ADPNLDIRNT  60
LQSIVKSQPS SYHQYQKSSE KPNQIPLPSN NHFEHQQNKL RGESTASVRR PSLSLPPKEN  120
QDQAGGCNSF STSPVTQLSF FPQQGKQSPS ISSGNVSTTY GDSPSTSPVL TSKTRIRWNQ  180
DLHEKFVECV NRLGGADKAT PKAILKMMCL DGLTIFHVKS HLQKYRIAKY LPDTAEGKSE  240
KRTTLNVEPQ LDMKTILQPN NVNFSGSGLQ IKEALQLQLD VQRRLHEQLE IQRNLQLRIE  300
EQGKQLKKMF DLQQKTSNDL FKTQNLDIAC HEDAPSDSLN AIQVSSPEDS GNSNFPSKIS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A4e-22173230259Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B4e-22173230259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A4e-22173230259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C4e-22173230259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D4e-22173230259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F4e-22173230259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H4e-22173230259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J4e-22173230259Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008240945.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008240945.10.0PREDICTED: probable transcription factor KAN3 isoform X1
SwissprotQ0WVU32e-69PHL5_ARATH; Myb family transcription factor PHL5
TrEMBLA0A251N8480.0A0A251N848_PRUPE; Uncharacterized protein
STRINGXP_008240945.10.0(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06800.17e-72G2-like family protein