PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008240939.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family C3H
Protein Properties Length: 297aa    MW: 31304.3 Da    PI: 9.3626
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008240939.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.51.7e-063861225
                    -S---SGGGGTS--TTTTT-SS-S CS
         zf-CCCH  2 ktelCrffartGtCkyGdrCkFaH 25
                    k ++C  f+ t  C++G++C+F H
  XP_008240939.1 38 KSKPCTKFFSTAGCPFGESCHFLH 61
                    7789******************** PP
2zf-CCCH23.78.6e-08102127227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     k +lC+ +     Ck+Gd+C+FaHg+
  XP_008240939.1 102 KSRLCNKYNSAEGCKFGDKCHFAHGE 127
                     6799******99************96 PP
3zf-CCCH36.58.1e-12264288126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     ykt+lC++f + GtC +G+rC+FaHg
  XP_008240939.1 264 YKTKLCDNFTK-GTCTFGERCHFAHG 288
                     9**********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.7093664IPR000571Zinc finger, CCCH-type
SMARTSM003560.913663IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.2E-63762IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-43861IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.1E-83861IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-1298130IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-7100131IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.112100128IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-5102127IPR000571Zinc finger, CCCH-type
SMARTSM003560.025102127IPR000571Zinc finger, CCCH-type
SMARTSM003222.6E-13168238IPR004087K Homology domain
Gene3DG3DSA:3.30.1370.102.4E-17168237IPR004088K Homology domain, type 1
PROSITE profilePS5008415.179169233IPR004088K Homology domain, type 1
PfamPF000136.9E-13171235IPR004088K Homology domain, type 1
CDDcd001053.26E-16171233No hitNo description
SuperFamilySSF547915.99E-16171264IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.106.9E-17259294IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.41E-9262293IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.511263290IPR000571Zinc finger, CCCH-type
SMARTSM003566.1E-8263289IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-9264288IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MMDTRKRGRH EAGAFHANGG FKKNKQELES FSTGVGSKSK PCTKFFSTAG CPFGESCHFL  60
HYVPGGYNAV AQMMNLAPAP QASRNIAPPP SNSNGSSSSA VKSRLCNKYN SAEGCKFGDK  120
CHFAHGEWEL GKHLAQSHDD PRAMGPGPGR MTNWMEPPLA GPASSFGASS TAKISVDASL  180
AGAIIGKGGV NSKQICRQTG AKLSIREHES DPNLRNIELE GTFEQIQQAS AMVRELIVTV  240
SMSGPAKTPG GGAPGAPAPP GSNYKTKLCD NFTKGTCTFG ERCHFAHGAA ELRKSGM
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008240939.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008240939.10.0PREDICTED: zinc finger CCCH domain-containing protein 14
SwissprotQ7F8R01e-112C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLM5W9V30.0M5W9V3_PRUPE; Uncharacterized protein
STRINGXP_008240939.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF146232102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.12e-97C3H family protein