PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008240879.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family SBP
Protein Properties Length: 383aa    MW: 41111.6 Da    PI: 9.6724
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008240879.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP138.22.3e-4381158178
                     --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
             SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                     +CqvegC++dls+ak y++rhkvC  hsk+p+v+v+gleqrfCqqCsrfh+l efD++krsCrrrLa+hnerrrk+q+
  XP_008240879.1  81 RCQVEGCQVDLSDAKAYYSRHKVCGLHSKTPMVIVAGLEQRFCQQCSRFHQLPEFDQGKRSCRRRLAGHNERRRKPQP 158
                     6**************************************************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.106.6E-3575143IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.36879156IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.09E-4180161IPR004333Transcription factor, SBP-box
PfamPF031101.2E-3282155IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MTIMEMGSSS MTDSGSSSSS SPPNSSTESL NGLKFGRKIY FEDAGLGAPY KSGSAGSSSS  60
GATPPKKQRG VNLAQSGQPP RCQVEGCQVD LSDAKAYYSR HKVCGLHSKT PMVIVAGLEQ  120
RFCQQCSRFH QLPEFDQGKR SCRRRLAGHN ERRRKPQPGS ILSARFGRLS SSIYENSSRV  180
GSFLMDFTAY PRVSGRDAWA TTRTSERVPG NQNSNDTGKF LQHPWQSNSE ITPSGLYLQG  240
SAGGTSYPGP GIPPGECVTG VTDSSCALSL LSSQPWGSRN RVSGVGMNTV INTQGPPVGQ  300
PITHAGTSNH FPTTSWGFKG NAGSSSHEML PDLGLGQLSQ PPLSTQYSGV LELSQQSSRR  360
QQQMELGHTR GYDTSSQHVH WSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A4e-30821551184squamosa promoter binding protein-like 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008240879.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008240879.10.0PREDICTED: squamosa promoter-binding-like protein 9
TrEMBLA0A314YMZ60.0A0A314YMZ6_PRUYE; Squamosa promoter-binding-like protein 9
STRINGXP_008240879.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42083359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42200.13e-70squamosa promoter binding protein-like 9